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Cluster: Rep_63_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_63_c_10 Rep_63_c_10_3 1971 3698 + GH32
pfam Rep_63_c_10 Rep_63_c_10_4 3802 5469 - SusD_RagB | SusD-like_2 | SusD-like_3
TC Rep_63_c_10 Rep_63_c_10_5 5469 8618 - 1.B.14.6.1
TC Rep_63_c_10 Rep_63_c_10_6 8789 9241 - 1.B.6.6.10
TC Rep_63_c_10 Rep_63_c_10_7 9260 9865 - 3.D.6.1.2
TC Rep_63_c_10 Rep_63_c_10_8 9871 10455 - 3.D.6.1.2
TC Rep_63_c_10 Rep_63_c_10_9 10448 10993 - 3.D.6.1.2
TC Rep_63_c_10 Rep_63_c_10_10 11024 12010 - 3.D.6.1.2
TC Rep_63_c_10 Rep_63_c_10_11 12018 13391 - 3.D.6.1.1
TC Rep_63_c_10 Rep_63_c_10_12 13384 14334 - 3.D.6.1.3
Gene ID: Rep_63_c_10_3
Type: CAZyme
Location: 1971 - 3698 (+)
Gene ID: Rep_63_c_10_4
Type: pfam
Location: 3802 - 5469 (-)
Gene ID: Rep_63_c_10_5
Type: TC
Location: 5469 - 8618 (-)
Gene ID: Rep_63_c_10_6
Type: TC
Location: 8789 - 9241 (-)
Gene ID: Rep_63_c_10_7
Type: TC
Location: 9260 - 9865 (-)
Gene ID: Rep_63_c_10_8
Type: TC
Location: 9871 - 10455 (-)
Gene ID: Rep_63_c_10_9
Type: TC
Location: 10448 - 10993 (-)
Gene ID: Rep_63_c_10_10
Type: TC
Location: 11024 - 12010 (-)
Gene ID: Rep_63_c_10_11
Type: TC
Location: 12018 - 13391 (-)
Gene ID: Rep_63_c_10_12
Type: TC
Location: 13384 - 14334 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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