Cluster: Rep_631_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_631
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_631_c_0 | Rep_631_c_0_179 | 228274 | 229899 | - | 8.A.46.1.3 |
| TC | Rep_631_c_0 | Rep_631_c_0_180 | 229913 | 233107 | - | 1.B.14.6.1 |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_181 | 233276 | 234976 | - | GH20 |
| sulfatase | Rep_631_c_0 | Rep_631_c_0_182 | 234987 | 235808 | - | S1_7 |
| pfam | Rep_631_c_0 | Rep_631_c_0_183 | 235805 | 236800 | - | Metallophos |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_184 | 236838 | 238445 | - | GH63 |
| pfam | Rep_631_c_0 | Rep_631_c_0_185 | 238458 | 240389 | - | Alk_phosphatase |
| pfam | Rep_631_c_0 | Rep_631_c_0_186 | 240402 | 241250 | - | Exo_endo_phos |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_187 | 241264 | 244146 | - | GH92 |
Gene ID: Rep_631_c_0_179
Type: TC
Location: 228274 - 229899 (-)
Type: TC
Location: 228274 - 229899 (-)
Gene ID: Rep_631_c_0_180
Type: TC
Location: 229913 - 233107 (-)
Type: TC
Location: 229913 - 233107 (-)
Gene ID: Rep_631_c_0_181
Type: CAZyme
Location: 233276 - 234976 (-)
Type: CAZyme
Location: 233276 - 234976 (-)
Gene ID: Rep_631_c_0_182
Type: sulfatase
Location: 234987 - 235808 (-)
Type: sulfatase
Location: 234987 - 235808 (-)
Gene ID: Rep_631_c_0_183
Type: pfam
Location: 235805 - 236800 (-)
Type: pfam
Location: 235805 - 236800 (-)
Gene ID: Rep_631_c_0_184
Type: CAZyme
Location: 236838 - 238445 (-)
Type: CAZyme
Location: 236838 - 238445 (-)
Gene ID: Rep_631_c_0_185
Type: pfam
Location: 238458 - 240389 (-)
Type: pfam
Location: 238458 - 240389 (-)
Gene ID: Rep_631_c_0_186
Type: pfam
Location: 240402 - 241250 (-)
Type: pfam
Location: 240402 - 241250 (-)
Gene ID: Rep_631_c_0_187
Type: CAZyme
Location: 241264 - 244146 (-)
Type: CAZyme
Location: 241264 - 244146 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes dispar
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_631_c_0_179 | vegan > omnivore | 1.78728 | 0.00863 |
| Rep_631_c_0_180 | vegan > omnivore | 1.14638 | 0.03152 |