Cluster: Rep_631_CGC38
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_631
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_631_c_0 | Rep_631_c_0_2054 | 2581149 | 2582123 | + | GT2 |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_2055 | 2583290 | 2584453 | + | GT4 |
| pfam | Rep_631_c_0 | Rep_631_c_0_2056 | 2584975 | 2586138 | + | EpsG |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_2057 | 2586288 | 2587211 | + | GT4 |
| pfam | Rep_631_c_0 | Rep_631_c_0_2058 | 2587236 | 2588222 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_2059 | 2588224 | 2589003 | + | GT2 |
| pfam | Rep_631_c_0 | Rep_631_c_0_2060 | 2589269 | 2590357 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | Rep_631_c_0 | Rep_631_c_0_2061 | 2590367 | 2591308 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_2062 | 2592401 | 2594398 | + | GH97 |
| STP | Rep_631_c_0 | Rep_631_c_0_2063 | 2594533 | 2595795 | + | FecR |
| TC | Rep_631_c_0 | Rep_631_c_0_2064 | 2595881 | 2599231 | + | 1.B.14.6.1 |
| pfam | Rep_631_c_0 | Rep_631_c_0_2065 | 2599242 | 2601059 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_2066 | 2601081 | 2602073 | + | CBM32 |
Gene ID: Rep_631_c_0_2054
Type: CAZyme
Location: 2581149 - 2582123 (+)
Type: CAZyme
Location: 2581149 - 2582123 (+)
Gene ID: Rep_631_c_0_2055
Type: CAZyme
Location: 2583290 - 2584453 (+)
Type: CAZyme
Location: 2583290 - 2584453 (+)
Gene ID: Rep_631_c_0_2056
Type: pfam
Location: 2584975 - 2586138 (+)
Type: pfam
Location: 2584975 - 2586138 (+)
Gene ID: Rep_631_c_0_2057
Type: CAZyme
Location: 2586288 - 2587211 (+)
Type: CAZyme
Location: 2586288 - 2587211 (+)
Gene ID: Rep_631_c_0_2058
Type: pfam
Location: 2587236 - 2588222 (+)
Type: pfam
Location: 2587236 - 2588222 (+)
Gene ID: Rep_631_c_0_2059
Type: CAZyme
Location: 2588224 - 2589003 (+)
Type: CAZyme
Location: 2588224 - 2589003 (+)
Gene ID: Rep_631_c_0_2060
Type: pfam
Location: 2589269 - 2590357 (+)
Type: pfam
Location: 2589269 - 2590357 (+)
Gene ID: Rep_631_c_0_2061
Type: pfam
Location: 2590367 - 2591308 (+)
Type: pfam
Location: 2590367 - 2591308 (+)
Gene ID: Rep_631_c_0_2062
Type: CAZyme
Location: 2592401 - 2594398 (+)
Type: CAZyme
Location: 2592401 - 2594398 (+)
Gene ID: Rep_631_c_0_2063
Type: STP
Location: 2594533 - 2595795 (+)
Type: STP
Location: 2594533 - 2595795 (+)
Gene ID: Rep_631_c_0_2064
Type: TC
Location: 2595881 - 2599231 (+)
Type: TC
Location: 2595881 - 2599231 (+)
Gene ID: Rep_631_c_0_2065
Type: pfam
Location: 2599242 - 2601059 (+)
Type: pfam
Location: 2599242 - 2601059 (+)
Gene ID: Rep_631_c_0_2066
Type: CAZyme
Location: 2601081 - 2602073 (+)
Type: CAZyme
Location: 2601081 - 2602073 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes dispar
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_631_c_0_2060 | vegan > omnivore | 1.19965 | 0.03152 |
| Rep_631_c_0_2061 | vegan > omnivore | 1.24754 | 0.03152 |