dbCAN Logo

Cluster: Rep_631_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_631_c_0 Rep_631_c_0_1963 2452847 2454658 - GH2
CAZyme Rep_631_c_0 Rep_631_c_0_1964 2455054 2456085 + GH130_4
pfam Rep_631_c_0 Rep_631_c_0_1965 2456132 2457805 + GxGYxYP_C | GxGYxYP_N | GxGYxYP_N_2nd | GxGYxYP_N_3rd
peptidase Rep_631_c_0 Rep_631_c_0_1966 2458059 2458427 + M14.UNW
TC Rep_631_c_0 Rep_631_c_0_1967 2458396 2461092 + 1.B.14.6.1
pfam Rep_631_c_0 Rep_631_c_0_1968 2461114 2462916 + SusD_RagB | SusD-like_3
CAZyme Rep_631_c_0 Rep_631_c_0_1969 2463111 2466053 + CBM32 | GH2
CAZyme Rep_631_c_0 Rep_631_c_0_1970 2466058 2467500 + CE20
pfam Rep_631_c_0 Rep_631_c_0_1971 2467583 2468302 + Lipase_GDSL | Lipase_GDSL_2
CAZyme Rep_631_c_0 Rep_631_c_0_1972 2468385 2470367 + CE20 | CE20
TF Rep_631_c_0 Rep_631_c_0_1973 2470578 2474606 + HTH_AraC
TC Rep_631_c_0 Rep_631_c_0_1974 2474719 2476005 + 2.A.1.33.2
pfam Rep_631_c_0 Rep_631_c_0_1975 2476422 2477804 - Lipase_GDSL | Lipase_GDSL_2
CAZyme Rep_631_c_0 Rep_631_c_0_1976 2477833 2479995 - GH92
CAZyme Rep_631_c_0 Rep_631_c_0_1977 2480017 2482344 - GH92
CAZyme Rep_631_c_0 Rep_631_c_0_1978 2482368 2484737 - GH92
CAZyme Rep_631_c_0 Rep_631_c_0_1979 2484748 2487390 - GH38
pfam Rep_631_c_0 Rep_631_c_0_1980 2487575 2489188 - DUF6377
CAZyme Rep_631_c_0 Rep_631_c_0_1981 2489531 2491561 + GH2
Gene ID: Rep_631_c_0_1963
Type: CAZyme
Location: 2452847 - 2454658 (-)
Gene ID: Rep_631_c_0_1964
Type: CAZyme
Location: 2455054 - 2456085 (+)
Gene ID: Rep_631_c_0_1965
Type: pfam
Location: 2456132 - 2457805 (+)
Gene ID: Rep_631_c_0_1966
Type: peptidase
Location: 2458059 - 2458427 (+)
Gene ID: Rep_631_c_0_1967
Type: TC
Location: 2458396 - 2461092 (+)
Gene ID: Rep_631_c_0_1968
Type: pfam
Location: 2461114 - 2462916 (+)
Gene ID: Rep_631_c_0_1969
Type: CAZyme
Location: 2463111 - 2466053 (+)
Gene ID: Rep_631_c_0_1970
Type: CAZyme
Location: 2466058 - 2467500 (+)
Gene ID: Rep_631_c_0_1971
Type: pfam
Location: 2467583 - 2468302 (+)
Gene ID: Rep_631_c_0_1972
Type: CAZyme
Location: 2468385 - 2470367 (+)
Gene ID: Rep_631_c_0_1973
Type: TF
Location: 2470578 - 2474606 (+)
Gene ID: Rep_631_c_0_1974
Type: TC
Location: 2474719 - 2476005 (+)
Gene ID: Rep_631_c_0_1975
Type: pfam
Location: 2476422 - 2477804 (-)
Gene ID: Rep_631_c_0_1976
Type: CAZyme
Location: 2477833 - 2479995 (-)
Gene ID: Rep_631_c_0_1977
Type: CAZyme
Location: 2480017 - 2482344 (-)
Gene ID: Rep_631_c_0_1978
Type: CAZyme
Location: 2482368 - 2484737 (-)
Gene ID: Rep_631_c_0_1979
Type: CAZyme
Location: 2484748 - 2487390 (-)
Gene ID: Rep_631_c_0_1980
Type: pfam
Location: 2487575 - 2489188 (-)
Gene ID: Rep_631_c_0_1981
Type: CAZyme
Location: 2489531 - 2491561 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes dispar

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_631_c_0_1975 vegetarian > vegan 1.04640 0.00602
Rep_631_c_0_1976 vegetarian > vegan 1.28638 0.00602
Rep_631_c_0_1977 vegetarian > vegan 1.40371 0.00602
Rep_631_c_0_1978 vegetarian > vegan 1.15183 0.00602
Rep_631_c_0_1979 vegetarian > vegan 1.21177 0.00602

🧭 Explore Read Mapping of CGC

← Back to Cluster List