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Cluster: Rep_631_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_631_c_0 Rep_631_c_0_1666 2059444 2061714 + GT20
CAZyme Rep_631_c_0 Rep_631_c_0_1667 2061707 2063494 + GH15
CAZyme Rep_631_c_0 Rep_631_c_0_1668 2063657 2065759 - GH20
CAZyme Rep_631_c_0 Rep_631_c_0_1669 2065762 2068086 - GH20
TC Rep_631_c_0 Rep_631_c_0_1670 2068304 2070103 - 8.A.46.2.1
TC Rep_631_c_0 Rep_631_c_0_1671 2070123 2073245 - 1.B.14.6.13
pfam Rep_631_c_0 Rep_631_c_0_1672 2074015 2074329 + rhaM
TF Rep_631_c_0 Rep_631_c_0_1673 2074292 2075245 - HTH_AraC | HTH_AraC
CAZyme Rep_631_c_0 Rep_631_c_0_1674 2075494 2077443 + GH97
pfam Rep_631_c_0 Rep_631_c_0_1675 2077772 2079430 - SusD_RagB | SusD-like_3
TC Rep_631_c_0 Rep_631_c_0_1676 2079443 2082574 - 1.B.14.6.1
CAZyme Rep_631_c_0 Rep_631_c_0_1677 2082945 2086196 - GH106
CAZyme Rep_631_c_0 Rep_631_c_0_1678 2086209 2088233 - GH127
CAZyme Rep_631_c_0 Rep_631_c_0_1679 2088246 2091407 - GH106
NULL(UNKNOWN) Rep_631_c_0 Rep_631_c_0_1680 2091437 2093572 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_631_c_0 Rep_631_c_0_1681 2093815 2096625 - CBM67 | GH78
TF Rep_631_c_0 Rep_631_c_0_1682 2097179 2097763 + GerE
STP Rep_631_c_0 Rep_631_c_0_1683 2097842 2098843 + FecR
TC Rep_631_c_0 Rep_631_c_0_1684 2099004 2102357 + 1.B.14.6.13
TC Rep_631_c_0 Rep_631_c_0_1685 2102371 2103945 + 8.A.46.2.2
CAZyme Rep_631_c_0 Rep_631_c_0_1686 2103975 2105876 + GH18
Gene ID: Rep_631_c_0_1666
Type: CAZyme
Location: 2059444 - 2061714 (+)
Gene ID: Rep_631_c_0_1667
Type: CAZyme
Location: 2061707 - 2063494 (+)
Gene ID: Rep_631_c_0_1668
Type: CAZyme
Location: 2063657 - 2065759 (-)
Gene ID: Rep_631_c_0_1669
Type: CAZyme
Location: 2065762 - 2068086 (-)
Gene ID: Rep_631_c_0_1670
Type: TC
Location: 2068304 - 2070103 (-)
Gene ID: Rep_631_c_0_1671
Type: TC
Location: 2070123 - 2073245 (-)
Gene ID: Rep_631_c_0_1672
Type: pfam
Location: 2074015 - 2074329 (+)
Gene ID: Rep_631_c_0_1673
Type: TF
Location: 2074292 - 2075245 (-)
Gene ID: Rep_631_c_0_1674
Type: CAZyme
Location: 2075494 - 2077443 (+)
Gene ID: Rep_631_c_0_1675
Type: pfam
Location: 2077772 - 2079430 (-)
Gene ID: Rep_631_c_0_1676
Type: TC
Location: 2079443 - 2082574 (-)
Gene ID: Rep_631_c_0_1677
Type: CAZyme
Location: 2082945 - 2086196 (-)
Gene ID: Rep_631_c_0_1678
Type: CAZyme
Location: 2086209 - 2088233 (-)
Gene ID: Rep_631_c_0_1679
Type: CAZyme
Location: 2088246 - 2091407 (-)
Gene ID: Rep_631_c_0_1680
Type:
Location: 2091437 - 2093572 (-)
Gene ID: Rep_631_c_0_1681
Type: CAZyme
Location: 2093815 - 2096625 (-)
Gene ID: Rep_631_c_0_1682
Type: TF
Location: 2097179 - 2097763 (+)
Gene ID: Rep_631_c_0_1683
Type: STP
Location: 2097842 - 2098843 (+)
Gene ID: Rep_631_c_0_1684
Type: TC
Location: 2099004 - 2102357 (+)
Gene ID: Rep_631_c_0_1685
Type: TC
Location: 2102371 - 2103945 (+)
Gene ID: Rep_631_c_0_1686
Type: CAZyme
Location: 2103975 - 2105876 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes dispar

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_631_c_0_1666 vegetarian > omnivore 1.07012 0.03201
Rep_631_c_0_1675 vegetarian > vegan 12.88078 0.00602
Rep_631_c_0_1678 vegetarian > vegan 1.36396 0.00602
Rep_631_c_0_1682 vegan > omnivore 1.16125 0.03152

🧭 Explore Read Mapping of CGC

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