Cluster: Rep_631_CGC3
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_631
- CGC Family ID: CGCFAM_00475
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_631_c_0 | Rep_631_c_0_145 | 187557 | 187907 | + | 3.D.1.8.1 |
| TC | Rep_631_c_0 | Rep_631_c_0_146 | 187898 | 188551 | + | 3.D.1.3.1 |
| TC | Rep_631_c_0 | Rep_631_c_0_147 | 188548 | 190167 | + | 3.D.1.5.1 |
| TC | Rep_631_c_0 | Rep_631_c_0_148 | 190186 | 191262 | + | 3.D.1.5.1 |
| STP | Rep_631_c_0 | Rep_631_c_0_149 | 191277 | 191717 | + | Fer4 | Fer4 |
| TC | Rep_631_c_0 | Rep_631_c_0_150 | 191721 | 192230 | + | 3.D.9.1.1 |
| TC | Rep_631_c_0 | Rep_631_c_0_151 | 192246 | 192554 | + | 3.D.1.2.1 |
| TC | Rep_631_c_0 | Rep_631_c_0_152 | 192573 | 194468 | + | 3.D.9.1.1 |
| TC | Rep_631_c_0 | Rep_631_c_0_153 | 194481 | 195965 | + | 3.D.1.5.1 |
| TC | Rep_631_c_0 | Rep_631_c_0_154 | 195973 | 197397 | + | 3.D.1.2.1 |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_155 | 197569 | 199158 | + | GT22 |
| TC | Rep_631_c_0 | Rep_631_c_0_156 | 199264 | 201399 | - | 8.A.51.1.1 |
| NULL(UNKNOWN) | Rep_631_c_0 | Rep_631_c_0_157 | 201423 | 202109 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_158 | 202134 | 203138 | - | GH73 |
| pfam | Rep_631_c_0 | Rep_631_c_0_159 | 203215 | 203814 | + | DUF4254 |
| CAZyme | Rep_631_c_0 | Rep_631_c_0_160 | 203798 | 204826 | + | GT9 |
Gene ID: Rep_631_c_0_145
Type: TC
Location: 187557 - 187907 (+)
Type: TC
Location: 187557 - 187907 (+)
Gene ID: Rep_631_c_0_146
Type: TC
Location: 187898 - 188551 (+)
Type: TC
Location: 187898 - 188551 (+)
Gene ID: Rep_631_c_0_147
Type: TC
Location: 188548 - 190167 (+)
Type: TC
Location: 188548 - 190167 (+)
Gene ID: Rep_631_c_0_148
Type: TC
Location: 190186 - 191262 (+)
Type: TC
Location: 190186 - 191262 (+)
Gene ID: Rep_631_c_0_149
Type: STP
Location: 191277 - 191717 (+)
Type: STP
Location: 191277 - 191717 (+)
Gene ID: Rep_631_c_0_150
Type: TC
Location: 191721 - 192230 (+)
Type: TC
Location: 191721 - 192230 (+)
Gene ID: Rep_631_c_0_151
Type: TC
Location: 192246 - 192554 (+)
Type: TC
Location: 192246 - 192554 (+)
Gene ID: Rep_631_c_0_152
Type: TC
Location: 192573 - 194468 (+)
Type: TC
Location: 192573 - 194468 (+)
Gene ID: Rep_631_c_0_153
Type: TC
Location: 194481 - 195965 (+)
Type: TC
Location: 194481 - 195965 (+)
Gene ID: Rep_631_c_0_154
Type: TC
Location: 195973 - 197397 (+)
Type: TC
Location: 195973 - 197397 (+)
Gene ID: Rep_631_c_0_155
Type: CAZyme
Location: 197569 - 199158 (+)
Type: CAZyme
Location: 197569 - 199158 (+)
Gene ID: Rep_631_c_0_156
Type: TC
Location: 199264 - 201399 (-)
Type: TC
Location: 199264 - 201399 (-)
Gene ID: Rep_631_c_0_157
Type:
Location: 201423 - 202109 (-)
Type:
Location: 201423 - 202109 (-)
Gene ID: Rep_631_c_0_158
Type: CAZyme
Location: 202134 - 203138 (-)
Type: CAZyme
Location: 202134 - 203138 (-)
Gene ID: Rep_631_c_0_159
Type: pfam
Location: 203215 - 203814 (+)
Type: pfam
Location: 203215 - 203814 (+)
Gene ID: Rep_631_c_0_160
Type: CAZyme
Location: 203798 - 204826 (+)
Type: CAZyme
Location: 203798 - 204826 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes dispar
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.