Cluster: Rep_616_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_616
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_616_c_1 | Rep_616_c_1_196 | 233837 | 235243 | + | CE20 |
| CAZyme | Rep_616_c_1 | Rep_616_c_1_197 | 235268 | 236689 | + | CE20 |
| pfam | Rep_616_c_1 | Rep_616_c_1_198 | 236746 | 237051 | - | Acetyltransf_1 | Acetyltransf_CG |
| STP | Rep_616_c_1 | Rep_616_c_1_199 | 237108 | 238157 | + | HhH-GPD |
| TC | Rep_616_c_1 | Rep_616_c_1_200 | 238133 | 239086 | - | 2.A.19.5.2 |
| TC | Rep_616_c_1 | Rep_616_c_1_201 | 239132 | 239935 | - | 2.A.5.5.5 |
Gene ID: Rep_616_c_1_196
Type: CAZyme
Location: 233837 - 235243 (+)
Type: CAZyme
Location: 233837 - 235243 (+)
Gene ID: Rep_616_c_1_197
Type: CAZyme
Location: 235268 - 236689 (+)
Type: CAZyme
Location: 235268 - 236689 (+)
Gene ID: Rep_616_c_1_198
Type: pfam
Location: 236746 - 237051 (-)
Type: pfam
Location: 236746 - 237051 (-)
Gene ID: Rep_616_c_1_199
Type: STP
Location: 237108 - 238157 (+)
Type: STP
Location: 237108 - 238157 (+)
Gene ID: Rep_616_c_1_200
Type: TC
Location: 238133 - 239086 (-)
Type: TC
Location: 238133 - 239086 (-)
Gene ID: Rep_616_c_1_201
Type: TC
Location: 239132 - 239935 (-)
Type: TC
Location: 239132 - 239935 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.