Cluster: Rep_616_CGC40
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_616
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_616_c_9 | Rep_616_c_9_59 | 97775 | 99298 | - | GH183 |
| CAZyme | Rep_616_c_9 | Rep_616_c_9_60 | 99323 | 100939 | - | GH183 |
| pfam | Rep_616_c_9 | Rep_616_c_9_61 | 100923 | 102521 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_616_c_9 | Rep_616_c_9_62 | 102533 | 105469 | - | 1.B.14.6.1 |
| CAZyme | Rep_616_c_9 | Rep_616_c_9_63 | 105487 | 107073 | - | GH172 |
| STP | Rep_616_c_9 | Rep_616_c_9_64 | 107098 | 107958 | - | PfkB |
| TC | Rep_616_c_9 | Rep_616_c_9_65 | 107960 | 109288 | - | 2.A.1.1.106 |
Gene ID: Rep_616_c_9_59
Type: CAZyme
Location: 97775 - 99298 (-)
Type: CAZyme
Location: 97775 - 99298 (-)
Gene ID: Rep_616_c_9_60
Type: CAZyme
Location: 99323 - 100939 (-)
Type: CAZyme
Location: 99323 - 100939 (-)
Gene ID: Rep_616_c_9_61
Type: pfam
Location: 100923 - 102521 (-)
Type: pfam
Location: 100923 - 102521 (-)
Gene ID: Rep_616_c_9_62
Type: TC
Location: 102533 - 105469 (-)
Type: TC
Location: 102533 - 105469 (-)
Gene ID: Rep_616_c_9_63
Type: CAZyme
Location: 105487 - 107073 (-)
Type: CAZyme
Location: 105487 - 107073 (-)
Gene ID: Rep_616_c_9_64
Type: STP
Location: 107098 - 107958 (-)
Type: STP
Location: 107098 - 107958 (-)
Gene ID: Rep_616_c_9_65
Type: TC
Location: 107960 - 109288 (-)
Type: TC
Location: 107960 - 109288 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_616_c_9_59 | vegetarian > omnivore | 1.45756 | 0.04746 |
| Rep_616_c_9_59 | vegan > omnivore | 1.79897 | 0.00566 |
| Rep_616_c_9_60 | vegan > omnivore | 1.88151 | 0.00566 |
| Rep_616_c_9_60 | vegetarian > omnivore | 1.39595 | 0.04413 |
| Rep_616_c_9_61 | vegetarian > omnivore | 1.51411 | 0.04413 |
| Rep_616_c_9_61 | vegan > omnivore | 1.88649 | 0.00566 |
| Rep_616_c_9_62 | vegetarian > omnivore | 1.44391 | 0.04746 |
| Rep_616_c_9_62 | vegan > omnivore | 1.78391 | 0.00566 |
| Rep_616_c_9_63 | vegetarian > omnivore | 1.67942 | 0.04413 |
| Rep_616_c_9_63 | vegan > omnivore | 1.87501 | 0.00566 |
| Rep_616_c_9_64 | vegetarian > omnivore | 1.67284 | 0.04413 |
| Rep_616_c_9_64 | vegan > omnivore | 2.00727 | 0.00566 |
| Rep_616_c_9_65 | vegan > omnivore | 1.68681 | 0.00566 |
| Rep_616_c_9_65 | vegetarian > omnivore | 1.37515 | 0.04746 |