Cluster: Rep_616_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_616
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_616_c_8 | Rep_616_c_8_16 | 19698 | 22907 | - | GH106 |
| pfam | Rep_616_c_8 | Rep_616_c_8_17 | 22920 | 24074 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| CAZyme | Rep_616_c_8 | Rep_616_c_8_18 | 24096 | 25883 | - | GH78 |
| TF | Rep_616_c_8 | Rep_616_c_8_19 | 26227 | 27252 | + | LacI |
| TC | Rep_616_c_8 | Rep_616_c_8_20 | 27327 | 28493 | + | 2.A.1.7.17 |
Gene ID: Rep_616_c_8_16
Type: CAZyme
Location: 19698 - 22907 (-)
Type: CAZyme
Location: 19698 - 22907 (-)
Gene ID: Rep_616_c_8_17
Type: pfam
Location: 22920 - 24074 (-)
Type: pfam
Location: 22920 - 24074 (-)
Gene ID: Rep_616_c_8_18
Type: CAZyme
Location: 24096 - 25883 (-)
Type: CAZyme
Location: 24096 - 25883 (-)
Gene ID: Rep_616_c_8_19
Type: TF
Location: 26227 - 27252 (+)
Type: TF
Location: 26227 - 27252 (+)
Gene ID: Rep_616_c_8_20
Type: TC
Location: 27327 - 28493 (+)
Type: TC
Location: 27327 - 28493 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.