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Cluster: Rep_616_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_616_c_0 Rep_616_c_0_157 194901 196910 + GH97
CAZyme Rep_616_c_0 Rep_616_c_0_158 196937 198127 + GH130_1
TC Rep_616_c_0 Rep_616_c_0_159 198124 199566 + 2.A.2.3.5
pfam Rep_616_c_0 Rep_616_c_0_160 199563 200771 + GlcNAc_2-epim
TF Rep_616_c_0 Rep_616_c_0_161 200791 201684 + HTH_AraC
CAZyme Rep_616_c_0 Rep_616_c_0_162 201743 202822 + GH26
CAZyme Rep_616_c_0 Rep_616_c_0_163 202849 203970 + GH26
CAZyme Rep_616_c_0 Rep_616_c_0_164 203983 205323 + GH37
TC Rep_616_c_0 Rep_616_c_0_165 205336 208407 + 1.B.14.6.1
Gene ID: Rep_616_c_0_157
Type: CAZyme
Location: 194901 - 196910 (+)
Gene ID: Rep_616_c_0_158
Type: CAZyme
Location: 196937 - 198127 (+)
Gene ID: Rep_616_c_0_159
Type: TC
Location: 198124 - 199566 (+)
Gene ID: Rep_616_c_0_160
Type: pfam
Location: 199563 - 200771 (+)
Gene ID: Rep_616_c_0_161
Type: TF
Location: 200791 - 201684 (+)
Gene ID: Rep_616_c_0_162
Type: CAZyme
Location: 201743 - 202822 (+)
Gene ID: Rep_616_c_0_163
Type: CAZyme
Location: 202849 - 203970 (+)
Gene ID: Rep_616_c_0_164
Type: CAZyme
Location: 203983 - 205323 (+)
Gene ID: Rep_616_c_0_165
Type: TC
Location: 205336 - 208407 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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