Cluster: Rep_616_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_616
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_616_c_3 | Rep_616_c_3_283 | 347264 | 349192 | - | GH97 |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_284 | 349206 | 350738 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_616_c_3 | Rep_616_c_3_285 | 350751 | 353591 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_286 | 353588 | 356050 | - | GH2 |
| pfam | Rep_616_c_3 | Rep_616_c_3_287 | 356057 | 356581 | - | Fasciclin |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_288 | 356578 | 358002 | - | CE20 |
| NULL(UNKNOWN) | Rep_616_c_3 | Rep_616_c_3_289 | 358009 | 360840 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_616_c_3 | Rep_616_c_3_290 | 360842 | 363415 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_616_c_3 | Rep_616_c_3_291 | 363493 | 365112 | - | 8.A.46.1.3 |
| TC | Rep_616_c_3 | Rep_616_c_3_292 | 365131 | 368196 | - | 1.B.14.6.1 |
| pfam | Rep_616_c_3 | Rep_616_c_3_293 | 368232 | 370535 | - | FAD_binding_2 | FAD_oxidored | NAD_binding_8 |
| TC | Rep_616_c_3 | Rep_616_c_3_294 | 370543 | 372183 | - | 2.A.21.3.10 |
Gene ID: Rep_616_c_3_283
Type: CAZyme
Location: 347264 - 349192 (-)
Type: CAZyme
Location: 347264 - 349192 (-)
Gene ID: Rep_616_c_3_284
Type: CAZyme
Location: 349206 - 350738 (-)
Type: CAZyme
Location: 349206 - 350738 (-)
Gene ID: Rep_616_c_3_285
Type:
Location: 350751 - 353591 (-)
Type:
Location: 350751 - 353591 (-)
Gene ID: Rep_616_c_3_286
Type: CAZyme
Location: 353588 - 356050 (-)
Type: CAZyme
Location: 353588 - 356050 (-)
Gene ID: Rep_616_c_3_287
Type: pfam
Location: 356057 - 356581 (-)
Type: pfam
Location: 356057 - 356581 (-)
Gene ID: Rep_616_c_3_288
Type: CAZyme
Location: 356578 - 358002 (-)
Type: CAZyme
Location: 356578 - 358002 (-)
Gene ID: Rep_616_c_3_289
Type:
Location: 358009 - 360840 (-)
Type:
Location: 358009 - 360840 (-)
Gene ID: Rep_616_c_3_290
Type:
Location: 360842 - 363415 (-)
Type:
Location: 360842 - 363415 (-)
Gene ID: Rep_616_c_3_291
Type: TC
Location: 363493 - 365112 (-)
Type: TC
Location: 363493 - 365112 (-)
Gene ID: Rep_616_c_3_292
Type: TC
Location: 365131 - 368196 (-)
Type: TC
Location: 365131 - 368196 (-)
Gene ID: Rep_616_c_3_293
Type: pfam
Location: 368232 - 370535 (-)
Type: pfam
Location: 368232 - 370535 (-)
Gene ID: Rep_616_c_3_294
Type: TC
Location: 370543 - 372183 (-)
Type: TC
Location: 370543 - 372183 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.