Cluster: Rep_616_CGC14
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_616
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_616_c_3 | Rep_616_c_3_58 | 69354 | 70424 | + | 2.A.98.1.3 |
| pfam | Rep_616_c_3 | Rep_616_c_3_59 | 70433 | 70999 | - | Acetyltransf_1 | Acetyltransf_7 |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_60 | 71116 | 72447 | - | PL1_2 |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_61 | 72460 | 75438 | - | GH2 |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_62 | 75426 | 77447 | - | GH97 |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_63 | 77460 | 78827 | - | GH105 |
| CAZyme | Rep_616_c_3 | Rep_616_c_3_64 | 78836 | 80284 | - | PL9 |
| NULL(UNKNOWN) | Rep_616_c_3 | Rep_616_c_3_65 | 80336 | 82042 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_616_c_3 | Rep_616_c_3_66 | 82069 | 83925 | - | 8.A.46.1.3 |
Gene ID: Rep_616_c_3_58
Type: TC
Location: 69354 - 70424 (+)
Type: TC
Location: 69354 - 70424 (+)
Gene ID: Rep_616_c_3_59
Type: pfam
Location: 70433 - 70999 (-)
Type: pfam
Location: 70433 - 70999 (-)
Gene ID: Rep_616_c_3_60
Type: CAZyme
Location: 71116 - 72447 (-)
Type: CAZyme
Location: 71116 - 72447 (-)
Gene ID: Rep_616_c_3_61
Type: CAZyme
Location: 72460 - 75438 (-)
Type: CAZyme
Location: 72460 - 75438 (-)
Gene ID: Rep_616_c_3_62
Type: CAZyme
Location: 75426 - 77447 (-)
Type: CAZyme
Location: 75426 - 77447 (-)
Gene ID: Rep_616_c_3_63
Type: CAZyme
Location: 77460 - 78827 (-)
Type: CAZyme
Location: 77460 - 78827 (-)
Gene ID: Rep_616_c_3_64
Type: CAZyme
Location: 78836 - 80284 (-)
Type: CAZyme
Location: 78836 - 80284 (-)
Gene ID: Rep_616_c_3_65
Type:
Location: 80336 - 82042 (-)
Type:
Location: 80336 - 82042 (-)
Gene ID: Rep_616_c_3_66
Type: TC
Location: 82069 - 83925 (-)
Type: TC
Location: 82069 - 83925 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_616_c_3_60 | vegetarian > omnivore | 1.44583 | 0.04746 |
| Rep_616_c_3_60 | vegetarian > vegan | 1.88020 | 0.02073 |
| Rep_616_c_3_61 | vegetarian > vegan | 1.83437 | 0.02073 |
| Rep_616_c_3_62 | vegetarian > vegan | 1.77534 | 0.03576 |
| Rep_616_c_3_63 | vegetarian > omnivore | 1.20690 | 0.04413 |
| Rep_616_c_3_63 | vegetarian > vegan | 2.20984 | 0.01787 |
| Rep_616_c_3_64 | vegetarian > omnivore | 1.13182 | 0.04746 |
| Rep_616_c_3_64 | vegetarian > vegan | 1.75970 | 0.02660 |
| Rep_616_c_3_65 | vegetarian > vegan | 1.61779 | 0.02073 |
| Rep_616_c_3_66 | vegetarian > vegan | 2.76345 | 0.01678 |