Cluster: Rep_614_CGC27
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_614
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_614_c_1 | Rep_614_c_1_2176 | 2691681 | 2694812 | + | 1.B.14.6.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_2177 | 2694826 | 2696409 | + | 8.A.46.1.3 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_2178 | 2696440 | 2697585 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_2179 | 2697585 | 2699450 | + | GH110 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_2180 | 2699440 | 2701263 | + | GH110 |
| peptidase | Rep_614_c_1 | Rep_614_c_1_2181 | 2701247 | 2702212 | + | S09.B04 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_2182 | 2702220 | 2704268 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_2183 | 2704283 | 2706034 | + | GH110 |
Gene ID: Rep_614_c_1_2176
Type: TC
Location: 2691681 - 2694812 (+)
Type: TC
Location: 2691681 - 2694812 (+)
Gene ID: Rep_614_c_1_2177
Type: TC
Location: 2694826 - 2696409 (+)
Type: TC
Location: 2694826 - 2696409 (+)
Gene ID: Rep_614_c_1_2178
Type:
Location: 2696440 - 2697585 (+)
Type:
Location: 2696440 - 2697585 (+)
Gene ID: Rep_614_c_1_2179
Type: CAZyme
Location: 2697585 - 2699450 (+)
Type: CAZyme
Location: 2697585 - 2699450 (+)
Gene ID: Rep_614_c_1_2180
Type: CAZyme
Location: 2699440 - 2701263 (+)
Type: CAZyme
Location: 2699440 - 2701263 (+)
Gene ID: Rep_614_c_1_2181
Type: peptidase
Location: 2701247 - 2702212 (+)
Type: peptidase
Location: 2701247 - 2702212 (+)
Gene ID: Rep_614_c_1_2182
Type:
Location: 2702220 - 2704268 (+)
Type:
Location: 2702220 - 2704268 (+)
Gene ID: Rep_614_c_1_2183
Type: CAZyme
Location: 2704283 - 2706034 (+)
Type: CAZyme
Location: 2704283 - 2706034 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_614_c_1_2176 | vegan > omnivore | 1.16836 | 0.00863 |
| Rep_614_c_1_2177 | vegan > omnivore | 1.26807 | 0.00863 |
| Rep_614_c_1_2178 | vegan > omnivore | 1.09774 | 0.00863 |
| Rep_614_c_1_2179 | vegan > omnivore | 1.27487 | 0.00863 |
| Rep_614_c_1_2180 | vegan > omnivore | 1.29508 | 0.00863 |
| Rep_614_c_1_2181 | vegan > omnivore | 1.14889 | 0.00863 |
| Rep_614_c_1_2182 | vegan > omnivore | 1.02301 | 0.00863 |
| Rep_614_c_1_2183 | vegan > omnivore | 1.14733 | 0.00863 |