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Cluster: Rep_614_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_614_c_1 Rep_614_c_1_2139 2632542 2634737 - GH97
CAZyme Rep_614_c_1 Rep_614_c_1_2140 2634750 2636627 - GH13_46
CAZyme Rep_614_c_1 Rep_614_c_1_2141 2636826 2638163 - GH13
CAZyme Rep_614_c_1 Rep_614_c_1_2142 2638174 2640492 - GH13_36
pfam Rep_614_c_1 Rep_614_c_1_2143 2640600 2642414 - SusE
TC Rep_614_c_1 Rep_614_c_1_2144 2642438 2644096 - 8.A.46.1.1
TC Rep_614_c_1 Rep_614_c_1_2145 2644110 2647133 - 1.B.14.6.1
TC Rep_614_c_1 Rep_614_c_1_2146 2647195 2648505 - 2.A.2.6.2
TC Rep_614_c_1 Rep_614_c_1_2147 2648729 2650111 + 8.A.59.2.1
TF Rep_614_c_1 Rep_614_c_1_2148 2650113 2650865 + LytTR
CAZyme Rep_614_c_1 Rep_614_c_1_2149 2651240 2653843 - GH77
Gene ID: Rep_614_c_1_2139
Type: CAZyme
Location: 2632542 - 2634737 (-)
Gene ID: Rep_614_c_1_2140
Type: CAZyme
Location: 2634750 - 2636627 (-)
Gene ID: Rep_614_c_1_2141
Type: CAZyme
Location: 2636826 - 2638163 (-)
Gene ID: Rep_614_c_1_2142
Type: CAZyme
Location: 2638174 - 2640492 (-)
Gene ID: Rep_614_c_1_2143
Type: pfam
Location: 2640600 - 2642414 (-)
Gene ID: Rep_614_c_1_2144
Type: TC
Location: 2642438 - 2644096 (-)
Gene ID: Rep_614_c_1_2145
Type: TC
Location: 2644110 - 2647133 (-)
Gene ID: Rep_614_c_1_2146
Type: TC
Location: 2647195 - 2648505 (-)
Gene ID: Rep_614_c_1_2147
Type: TC
Location: 2648729 - 2650111 (+)
Gene ID: Rep_614_c_1_2148
Type: TF
Location: 2650113 - 2650865 (+)
Gene ID: Rep_614_c_1_2149
Type: CAZyme
Location: 2651240 - 2653843 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes shahii

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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