Cluster: Rep_614_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_614
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_614_c_1 | Rep_614_c_1_1524 | 1894994 | 1896148 | + | 9.B.97.1.2 |
| TC | Rep_614_c_1 | Rep_614_c_1_1525 | 1896153 | 1897550 | - | 2.A.25.1.5 |
| TC | Rep_614_c_1 | Rep_614_c_1_1526 | 1897673 | 1900141 | - | 3.A.3.5.5 |
| TF | Rep_614_c_1 | Rep_614_c_1_1527 | 1900204 | 1900776 | - | HTH_AraC |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_1528 | 1901081 | 1901188 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1529 | 1901225 | 1903090 | + | GH2 |
Gene ID: Rep_614_c_1_1524
Type: TC
Location: 1894994 - 1896148 (+)
Type: TC
Location: 1894994 - 1896148 (+)
Gene ID: Rep_614_c_1_1525
Type: TC
Location: 1896153 - 1897550 (-)
Type: TC
Location: 1896153 - 1897550 (-)
Gene ID: Rep_614_c_1_1526
Type: TC
Location: 1897673 - 1900141 (-)
Type: TC
Location: 1897673 - 1900141 (-)
Gene ID: Rep_614_c_1_1527
Type: TF
Location: 1900204 - 1900776 (-)
Type: TF
Location: 1900204 - 1900776 (-)
Gene ID: Rep_614_c_1_1528
Type:
Location: 1901081 - 1901188 (+)
Type:
Location: 1901081 - 1901188 (+)
Gene ID: Rep_614_c_1_1529
Type: CAZyme
Location: 1901225 - 1903090 (+)
Type: CAZyme
Location: 1901225 - 1903090 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.