Cluster: Rep_614_CGC12
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_614
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_614_c_1 | Rep_614_c_1_540 | 655788 | 656531 | - | 1.A.8.2.1 |
| pfam | Rep_614_c_1 | Rep_614_c_1_541 | 656545 | 658038 | - | FGGY_N | FGGY_C |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_542 | 658371 | 659522 | - | GH26 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_543 | 659557 | 661032 | - | GH173 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_544 | 661035 | 662516 | - | GH173 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_545 | 662572 | 664179 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_614_c_1 | Rep_614_c_1_546 | 664202 | 665719 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_614_c_1 | Rep_614_c_1_547 | 665732 | 668827 | - | 1.B.14.6.1 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_548 | 668982 | 670010 | - | GH130_5 |
| TC | Rep_614_c_1 | Rep_614_c_1_549 | 670012 | 671592 | - | 2.A.21.3.19 |
| TF | Rep_614_c_1 | Rep_614_c_1_550 | 671750 | 672613 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_551 | 672659 | 675196 | + | GH2 |
| pfam | Rep_614_c_1 | Rep_614_c_1_552 | 675212 | 676147 | + | DUF4886 |
| TC | Rep_614_c_1 | Rep_614_c_1_553 | 676440 | 678347 | - | 4.C.1.1.14 |
| sulfatase | Rep_614_c_1 | Rep_614_c_1_554 | 678353 | 680167 | - | S1_97 |
| pfam | Rep_614_c_1 | Rep_614_c_1_555 | 680261 | 681424 | + | Orn_DAP_Arg_deC | Orn_Arg_deC_N |
| TC | Rep_614_c_1 | Rep_614_c_1_556 | 681459 | 682364 | + | 2.A.7.3.57 |
Gene ID: Rep_614_c_1_540
Type: TC
Location: 655788 - 656531 (-)
Type: TC
Location: 655788 - 656531 (-)
Gene ID: Rep_614_c_1_541
Type: pfam
Location: 656545 - 658038 (-)
Type: pfam
Location: 656545 - 658038 (-)
Gene ID: Rep_614_c_1_542
Type: CAZyme
Location: 658371 - 659522 (-)
Type: CAZyme
Location: 658371 - 659522 (-)
Gene ID: Rep_614_c_1_543
Type: CAZyme
Location: 659557 - 661032 (-)
Type: CAZyme
Location: 659557 - 661032 (-)
Gene ID: Rep_614_c_1_544
Type: CAZyme
Location: 661035 - 662516 (-)
Type: CAZyme
Location: 661035 - 662516 (-)
Gene ID: Rep_614_c_1_545
Type:
Location: 662572 - 664179 (-)
Type:
Location: 662572 - 664179 (-)
Gene ID: Rep_614_c_1_546
Type: pfam
Location: 664202 - 665719 (-)
Type: pfam
Location: 664202 - 665719 (-)
Gene ID: Rep_614_c_1_547
Type: TC
Location: 665732 - 668827 (-)
Type: TC
Location: 665732 - 668827 (-)
Gene ID: Rep_614_c_1_548
Type: CAZyme
Location: 668982 - 670010 (-)
Type: CAZyme
Location: 668982 - 670010 (-)
Gene ID: Rep_614_c_1_549
Type: TC
Location: 670012 - 671592 (-)
Type: TC
Location: 670012 - 671592 (-)
Gene ID: Rep_614_c_1_550
Type: TF
Location: 671750 - 672613 (+)
Type: TF
Location: 671750 - 672613 (+)
Gene ID: Rep_614_c_1_551
Type: CAZyme
Location: 672659 - 675196 (+)
Type: CAZyme
Location: 672659 - 675196 (+)
Gene ID: Rep_614_c_1_552
Type: pfam
Location: 675212 - 676147 (+)
Type: pfam
Location: 675212 - 676147 (+)
Gene ID: Rep_614_c_1_553
Type: TC
Location: 676440 - 678347 (-)
Type: TC
Location: 676440 - 678347 (-)
Gene ID: Rep_614_c_1_554
Type: sulfatase
Location: 678353 - 680167 (-)
Type: sulfatase
Location: 678353 - 680167 (-)
Gene ID: Rep_614_c_1_555
Type: pfam
Location: 680261 - 681424 (+)
Type: pfam
Location: 680261 - 681424 (+)
Gene ID: Rep_614_c_1_556
Type: TC
Location: 681459 - 682364 (+)
Type: TC
Location: 681459 - 682364 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.