Cluster: Rep_614_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_614
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_614_c_1 | Rep_614_c_1_253 | 323384 | 324400 | - | GH18 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_254 | 324468 | 326084 | - | GH18 |
| pfam | Rep_614_c_1 | Rep_614_c_1_255 | 326088 | 327440 | - | BT_3987-like_N | Laminin_G_3 |
| pfam | Rep_614_c_1 | Rep_614_c_1_256 | 327447 | 328379 | - | GH18_BT1044-like |
| TC | Rep_614_c_1 | Rep_614_c_1_257 | 328381 | 329973 | - | 8.A.46.2.2 |
| TC | Rep_614_c_1 | Rep_614_c_1_258 | 329988 | 333329 | - | 1.B.14.6.13 |
Gene ID: Rep_614_c_1_253
Type: CAZyme
Location: 323384 - 324400 (-)
Type: CAZyme
Location: 323384 - 324400 (-)
Gene ID: Rep_614_c_1_254
Type: CAZyme
Location: 324468 - 326084 (-)
Type: CAZyme
Location: 324468 - 326084 (-)
Gene ID: Rep_614_c_1_255
Type: pfam
Location: 326088 - 327440 (-)
Type: pfam
Location: 326088 - 327440 (-)
Gene ID: Rep_614_c_1_256
Type: pfam
Location: 327447 - 328379 (-)
Type: pfam
Location: 327447 - 328379 (-)
Gene ID: Rep_614_c_1_257
Type: TC
Location: 328381 - 329973 (-)
Type: TC
Location: 328381 - 329973 (-)
Gene ID: Rep_614_c_1_258
Type: TC
Location: 329988 - 333329 (-)
Type: TC
Location: 329988 - 333329 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_614_c_1_253 | vegan > omnivore | 1.66468 | 0.00863 |
| Rep_614_c_1_254 | vegan > omnivore | 1.31445 | 0.00863 |
| Rep_614_c_1_256 | vegan > omnivore | 1.24257 | 0.00863 |
| Rep_614_c_1_257 | vegan > omnivore | 1.33050 | 0.00863 |