Cluster: Rep_608_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_608
- CGC Family ID: CGCFAM_01792
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_608_c_24 | Rep_608_c_24_47 | 45383 | 48526 | - | 2.A.6.3.6 |
| TC | Rep_608_c_24 | Rep_608_c_24_48 | 48523 | 49557 | - | 2.A.6.3.10 |
| TC | Rep_608_c_24 | Rep_608_c_24_49 | 49593 | 50930 | - | 1.B.17.2.10 |
| STP | Rep_608_c_24 | Rep_608_c_24_50 | 50927 | 51553 | - | TetR_N |
| pfam | Rep_608_c_24 | Rep_608_c_24_51 | 51975 | 52607 | + | CAT |
| TC | Rep_608_c_24 | Rep_608_c_24_52 | 52686 | 54374 | - | 2.A.17.1.6 |
| CAZyme | Rep_608_c_24 | Rep_608_c_24_53 | 54848 | 56878 | + | GH13_8 |
Gene ID: Rep_608_c_24_47
Type: TC
Location: 45383 - 48526 (-)
Type: TC
Location: 45383 - 48526 (-)
Gene ID: Rep_608_c_24_48
Type: TC
Location: 48523 - 49557 (-)
Type: TC
Location: 48523 - 49557 (-)
Gene ID: Rep_608_c_24_49
Type: TC
Location: 49593 - 50930 (-)
Type: TC
Location: 49593 - 50930 (-)
Gene ID: Rep_608_c_24_50
Type: STP
Location: 50927 - 51553 (-)
Type: STP
Location: 50927 - 51553 (-)
Gene ID: Rep_608_c_24_51
Type: pfam
Location: 51975 - 52607 (+)
Type: pfam
Location: 51975 - 52607 (+)
Gene ID: Rep_608_c_24_52
Type: TC
Location: 52686 - 54374 (-)
Type: TC
Location: 52686 - 54374 (-)
Gene ID: Rep_608_c_24_53
Type: CAZyme
Location: 54848 - 56878 (+)
Type: CAZyme
Location: 54848 - 56878 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.