Cluster: Rep_608_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_608
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_608_c_10 | Rep_608_c_10_9 | 9010 | 11019 | + | GH36 |
| TC | Rep_608_c_10 | Rep_608_c_10_10 | 11057 | 14053 | + | 1.B.14.6.1 |
| TC | Rep_608_c_10 | Rep_608_c_10_11 | 14093 | 15772 | + | 8.A.46.1.5 |
| NULL(UNKNOWN) | Rep_608_c_10 | Rep_608_c_10_12 | 15802 | 17904 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_608_c_10 | Rep_608_c_10_13 | 18013 | 19491 | + | DUF4832 | DUF4874 |
| TC | Rep_608_c_10 | Rep_608_c_10_14 | 19499 | 20368 | + | 2.A.7.18.4 |
Gene ID: Rep_608_c_10_9
Type: CAZyme
Location: 9010 - 11019 (+)
Type: CAZyme
Location: 9010 - 11019 (+)
Gene ID: Rep_608_c_10_10
Type: TC
Location: 11057 - 14053 (+)
Type: TC
Location: 11057 - 14053 (+)
Gene ID: Rep_608_c_10_11
Type: TC
Location: 14093 - 15772 (+)
Type: TC
Location: 14093 - 15772 (+)
Gene ID: Rep_608_c_10_12
Type:
Location: 15802 - 17904 (+)
Type:
Location: 15802 - 17904 (+)
Gene ID: Rep_608_c_10_13
Type: pfam
Location: 18013 - 19491 (+)
Type: pfam
Location: 18013 - 19491 (+)
Gene ID: Rep_608_c_10_14
Type: TC
Location: 19499 - 20368 (+)
Type: TC
Location: 19499 - 20368 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.