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Cluster: Rep_608_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_608_c_36 Rep_608_c_36_16 15875 17191 - 9.B.33.1.2
pfam Rep_608_c_36 Rep_608_c_36_17 17208 17735 - Hexapep | Hexapep | Hexapep_2
pfam Rep_608_c_36 Rep_608_c_36_18 17793 18572 - PRA-PH | MazG | MazG
CAZyme Rep_608_c_36 Rep_608_c_36_19 18655 20805 + GH20
pfam Rep_608_c_36 Rep_608_c_36_20 20898 23363 - tRNA_bind | FDX-ACB | B3_4 | B5 | tRNA_synthFbeta
NULL(UNKNOWN) Rep_608_c_36 Rep_608_c_36_21 23661 24785 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_608_c_36 Rep_608_c_36_22 24945 26852 - 4.C.1.1.14
sulfatase Rep_608_c_36 Rep_608_c_36_23 26854 28644 - S1_97
TF Rep_608_c_36 Rep_608_c_36_24 28740 29660 - HTH_AraC
TC Rep_608_c_36 Rep_608_c_36_25 29820 30839 + 2.A.6.2.11
TC Rep_608_c_36 Rep_608_c_36_26 30839 33910 + 2.A.6.2.37
Gene ID: Rep_608_c_36_16
Type: TC
Location: 15875 - 17191 (-)
Gene ID: Rep_608_c_36_17
Type: pfam
Location: 17208 - 17735 (-)
Gene ID: Rep_608_c_36_18
Type: pfam
Location: 17793 - 18572 (-)
Gene ID: Rep_608_c_36_19
Type: CAZyme
Location: 18655 - 20805 (+)
Gene ID: Rep_608_c_36_20
Type: pfam
Location: 20898 - 23363 (-)
Gene ID: Rep_608_c_36_21
Type:
Location: 23661 - 24785 (+)
Gene ID: Rep_608_c_36_22
Type: TC
Location: 24945 - 26852 (-)
Gene ID: Rep_608_c_36_23
Type: sulfatase
Location: 26854 - 28644 (-)
Gene ID: Rep_608_c_36_24
Type: TF
Location: 28740 - 29660 (-)
Gene ID: Rep_608_c_36_25
Type: TC
Location: 29820 - 30839 (+)
Gene ID: Rep_608_c_36_26
Type: TC
Location: 30839 - 33910 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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