Cluster: Rep_607_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_607
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_607_c_71 | Rep_607_c_71_30 | 37467 | 38735 | - | 2.A.1.1.106 |
| CAZyme | Rep_607_c_71 | Rep_607_c_71_31 | 38753 | 40528 | - | GH32 |
| CAZyme | Rep_607_c_71 | Rep_607_c_71_32 | 40525 | 42612 | - | GH172 |
| CAZyme | Rep_607_c_71 | Rep_607_c_71_33 | 42609 | 44285 | - | GH172 |
| pfam | Rep_607_c_71 | Rep_607_c_71_34 | 44329 | 46125 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_607_c_71 | Rep_607_c_71_35 | 46138 | 49209 | - | 1.B.14.6.1 |
Gene ID: Rep_607_c_71_30
Type: TC
Location: 37467 - 38735 (-)
Type: TC
Location: 37467 - 38735 (-)
Gene ID: Rep_607_c_71_31
Type: CAZyme
Location: 38753 - 40528 (-)
Type: CAZyme
Location: 38753 - 40528 (-)
Gene ID: Rep_607_c_71_32
Type: CAZyme
Location: 40525 - 42612 (-)
Type: CAZyme
Location: 40525 - 42612 (-)
Gene ID: Rep_607_c_71_33
Type: CAZyme
Location: 42609 - 44285 (-)
Type: CAZyme
Location: 42609 - 44285 (-)
Gene ID: Rep_607_c_71_34
Type: pfam
Location: 44329 - 46125 (-)
Type: pfam
Location: 44329 - 46125 (-)
Gene ID: Rep_607_c_71_35
Type: TC
Location: 46138 - 49209 (-)
Type: TC
Location: 46138 - 49209 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.