Cluster: Rep_583_CGC2
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_583
- CGC Family ID: CGCFAM_00128
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_583_c_0 | Rep_583_c_0_17 | 22740 | 24773 | + | 2.A.37.2.5 |
| CAZyme | Rep_583_c_0 | Rep_583_c_0_18 | 24803 | 26101 | + | GH171 |
| NULL(UNKNOWN) | Rep_583_c_0 | Rep_583_c_0_19 | 26098 | 27207 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_583_c_0 | Rep_583_c_0_20 | 27302 | 28495 | + | BACON | BACON_2 |
| CAZyme | Rep_583_c_0 | Rep_583_c_0_21 | 28674 | 30623 | - | GH13_46 |
| CAZyme | Rep_583_c_0 | Rep_583_c_0_22 | 30713 | 32041 | - | GH13 |
| CAZyme | Rep_583_c_0 | Rep_583_c_0_23 | 32305 | 34440 | - | GH97 |
| NULL(UNKNOWN) | Rep_583_c_0 | Rep_583_c_0_24 | 34461 | 35090 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_583_c_0 | Rep_583_c_0_25 | 35110 | 37146 | - | GH13_36 |
| pfam | Rep_583_c_0 | Rep_583_c_0_26 | 37215 | 39023 | - | SusE |
| TC | Rep_583_c_0 | Rep_583_c_0_27 | 39051 | 40658 | - | 8.A.46.1.1 |
| TC | Rep_583_c_0 | Rep_583_c_0_28 | 40679 | 43645 | - | 1.B.14.6.1 |
| TC | Rep_583_c_0 | Rep_583_c_0_29 | 43695 | 45011 | - | 2.A.2.6.3 |
| TF | Rep_583_c_0 | Rep_583_c_0_30 | 45164 | 45913 | + | LytTR |
| TC | Rep_583_c_0 | Rep_583_c_0_31 | 45914 | 46978 | - | 9.B.33.1.2 |
| NULL(UNKNOWN) | Rep_583_c_0 | Rep_583_c_0_32 | 46956 | 47357 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_583_c_0 | Rep_583_c_0_33 | 47419 | 50085 | + | CBM20 | CBM20 | GH77 |
| TC | Rep_583_c_0 | Rep_583_c_0_34 | 50082 | 51353 | + | 2.A.23.1.5 |
Gene ID: Rep_583_c_0_17
Type: TC
Location: 22740 - 24773 (+)
Type: TC
Location: 22740 - 24773 (+)
Gene ID: Rep_583_c_0_18
Type: CAZyme
Location: 24803 - 26101 (+)
Type: CAZyme
Location: 24803 - 26101 (+)
Gene ID: Rep_583_c_0_19
Type:
Location: 26098 - 27207 (+)
Type:
Location: 26098 - 27207 (+)
Gene ID: Rep_583_c_0_20
Type: pfam
Location: 27302 - 28495 (+)
Type: pfam
Location: 27302 - 28495 (+)
Gene ID: Rep_583_c_0_21
Type: CAZyme
Location: 28674 - 30623 (-)
Type: CAZyme
Location: 28674 - 30623 (-)
Gene ID: Rep_583_c_0_22
Type: CAZyme
Location: 30713 - 32041 (-)
Type: CAZyme
Location: 30713 - 32041 (-)
Gene ID: Rep_583_c_0_23
Type: CAZyme
Location: 32305 - 34440 (-)
Type: CAZyme
Location: 32305 - 34440 (-)
Gene ID: Rep_583_c_0_24
Type:
Location: 34461 - 35090 (-)
Type:
Location: 34461 - 35090 (-)
Gene ID: Rep_583_c_0_25
Type: CAZyme
Location: 35110 - 37146 (-)
Type: CAZyme
Location: 35110 - 37146 (-)
Gene ID: Rep_583_c_0_26
Type: pfam
Location: 37215 - 39023 (-)
Type: pfam
Location: 37215 - 39023 (-)
Gene ID: Rep_583_c_0_27
Type: TC
Location: 39051 - 40658 (-)
Type: TC
Location: 39051 - 40658 (-)
Gene ID: Rep_583_c_0_28
Type: TC
Location: 40679 - 43645 (-)
Type: TC
Location: 40679 - 43645 (-)
Gene ID: Rep_583_c_0_29
Type: TC
Location: 43695 - 45011 (-)
Type: TC
Location: 43695 - 45011 (-)
Gene ID: Rep_583_c_0_30
Type: TF
Location: 45164 - 45913 (+)
Type: TF
Location: 45164 - 45913 (+)
Gene ID: Rep_583_c_0_31
Type: TC
Location: 45914 - 46978 (-)
Type: TC
Location: 45914 - 46978 (-)
Gene ID: Rep_583_c_0_32
Type:
Location: 46956 - 47357 (-)
Type:
Location: 46956 - 47357 (-)
Gene ID: Rep_583_c_0_33
Type: CAZyme
Location: 47419 - 50085 (+)
Type: CAZyme
Location: 47419 - 50085 (+)
Gene ID: Rep_583_c_0_34
Type: TC
Location: 50082 - 51353 (+)
Type: TC
Location: 50082 - 51353 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA932
Genus
Coprenecus
Species
Coprenecus sp902388455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.