Cluster: Rep_579_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_579
- CGC Family ID: CGCFAM_11300
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_579_c_29 | Rep_579_c_29_88 | 86890 | 87867 | + | GT2 |
| CAZyme | Rep_579_c_29 | Rep_579_c_29_89 | 87864 | 89570 | + | GT14 |
| CAZyme | Rep_579_c_29 | Rep_579_c_29_90 | 89567 | 90454 | + | GT14 |
| pfam | Rep_579_c_29 | Rep_579_c_29_91 | 90497 | 92278 | - | HMGL-like | PYC_OADA |
| pfam | Rep_579_c_29 | Rep_579_c_29_92 | 92532 | 93365 | + | Glyco_tranf_2_4 |
| TC | Rep_579_c_29 | Rep_579_c_29_93 | 93427 | 95634 | + | 3.A.3.5.4 |
Gene ID: Rep_579_c_29_88
Type: CAZyme
Location: 86890 - 87867 (+)
Type: CAZyme
Location: 86890 - 87867 (+)
Gene ID: Rep_579_c_29_89
Type: CAZyme
Location: 87864 - 89570 (+)
Type: CAZyme
Location: 87864 - 89570 (+)
Gene ID: Rep_579_c_29_90
Type: CAZyme
Location: 89567 - 90454 (+)
Type: CAZyme
Location: 89567 - 90454 (+)
Gene ID: Rep_579_c_29_91
Type: pfam
Location: 90497 - 92278 (-)
Type: pfam
Location: 90497 - 92278 (-)
Gene ID: Rep_579_c_29_92
Type: pfam
Location: 92532 - 93365 (+)
Type: pfam
Location: 92532 - 93365 (+)
Gene ID: Rep_579_c_29_93
Type: TC
Location: 93427 - 95634 (+)
Type: TC
Location: 93427 - 95634 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA932
Genus
Coprenecus
Species
Coprenecus stercorigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.