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Cluster: Rep_572_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_572_c_6 Rep_572_c_6_25 26649 28478 + 3.A.1.5.18
pfam Rep_572_c_6 Rep_572_c_6_26 28487 30637 + DNA_topoisoIV
pfam Rep_572_c_6 Rep_572_c_6_27 30647 31255 - Pur_DNA_glyco
TC Rep_572_c_6 Rep_572_c_6_28 31288 34914 - 9.A.25.1.1
CAZyme Rep_572_c_6 Rep_572_c_6_29 34943 37129 - GH36
CAZyme Rep_572_c_6 Rep_572_c_6_30 37357 39261 - GH20
STP Rep_572_c_6 Rep_572_c_6_31 39436 40044 + TetR_N
TC Rep_572_c_6 Rep_572_c_6_32 40047 41282 + 2.A.6.2.44
TC Rep_572_c_6 Rep_572_c_6_33 41310 44546 + 2.A.6.2.22
TC Rep_572_c_6 Rep_572_c_6_34 44543 46150 + 2.A.6.2.25
Gene ID: Rep_572_c_6_25
Type: TC
Location: 26649 - 28478 (+)
Gene ID: Rep_572_c_6_26
Type: pfam
Location: 28487 - 30637 (+)
Gene ID: Rep_572_c_6_27
Type: pfam
Location: 30647 - 31255 (-)
Gene ID: Rep_572_c_6_28
Type: TC
Location: 31288 - 34914 (-)
Gene ID: Rep_572_c_6_29
Type: CAZyme
Location: 34943 - 37129 (-)
Gene ID: Rep_572_c_6_30
Type: CAZyme
Location: 37357 - 39261 (-)
Gene ID: Rep_572_c_6_31
Type: STP
Location: 39436 - 40044 (+)
Gene ID: Rep_572_c_6_32
Type: TC
Location: 40047 - 41282 (+)
Gene ID: Rep_572_c_6_33
Type: TC
Location: 41310 - 44546 (+)
Gene ID: Rep_572_c_6_34
Type: TC
Location: 44543 - 46150 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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