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Cluster: Rep_572_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_572_c_50 Rep_572_c_50_5 4222 5556 + 2.A.35.1.5
CAZyme Rep_572_c_50 Rep_572_c_50_6 5661 9395 + CBM32 | GH2
pfam Rep_572_c_50 Rep_572_c_50_7 9673 10467 + ATP-synt_A
TC Rep_572_c_50 Rep_572_c_50_8 10490 10687 + 3.A.2.1.6
pfam Rep_572_c_50 Rep_572_c_50_9 10702 11241 + ATP-synt_B
pfam Rep_572_c_50 Rep_572_c_50_10 11250 11792 + OSCP
TC Rep_572_c_50 Rep_572_c_50_11 11801 13333 + 3.A.2.1.5
TC Rep_572_c_50 Rep_572_c_50_12 13343 14215 + 3.A.2.1.7
TC Rep_572_c_50 Rep_572_c_50_13 14232 15671 + 3.A.2.1.3
pfam Rep_572_c_50 Rep_572_c_50_14 15675 15944 + ATP-synt_DE_N
CAZyme Rep_572_c_50 Rep_572_c_50_15 16193 17086 - GH16_3
sulfatase Rep_572_c_50 Rep_572_c_50_16 17096 18232 - S1_27
pfam Rep_572_c_50 Rep_572_c_50_17 18245 19321 - Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_1_2 | Glyco_trans_1_4
CAZyme Rep_572_c_50 Rep_572_c_50_18 19318 20346 - CE11
pfam Rep_572_c_50 Rep_572_c_50_19 20356 22029 - PRK
TC Rep_572_c_50 Rep_572_c_50_20 22039 22425 - 3.A.15.1.1
Gene ID: Rep_572_c_50_5
Type: TC
Location: 4222 - 5556 (+)
Gene ID: Rep_572_c_50_6
Type: CAZyme
Location: 5661 - 9395 (+)
Gene ID: Rep_572_c_50_7
Type: pfam
Location: 9673 - 10467 (+)
Gene ID: Rep_572_c_50_8
Type: TC
Location: 10490 - 10687 (+)
Gene ID: Rep_572_c_50_9
Type: pfam
Location: 10702 - 11241 (+)
Gene ID: Rep_572_c_50_10
Type: pfam
Location: 11250 - 11792 (+)
Gene ID: Rep_572_c_50_11
Type: TC
Location: 11801 - 13333 (+)
Gene ID: Rep_572_c_50_12
Type: TC
Location: 13343 - 14215 (+)
Gene ID: Rep_572_c_50_13
Type: TC
Location: 14232 - 15671 (+)
Gene ID: Rep_572_c_50_14
Type: pfam
Location: 15675 - 15944 (+)
Gene ID: Rep_572_c_50_15
Type: CAZyme
Location: 16193 - 17086 (-)
Gene ID: Rep_572_c_50_16
Type: sulfatase
Location: 17096 - 18232 (-)
Gene ID: Rep_572_c_50_17
Type: pfam
Location: 18245 - 19321 (-)
Gene ID: Rep_572_c_50_18
Type: CAZyme
Location: 19318 - 20346 (-)
Gene ID: Rep_572_c_50_19
Type: pfam
Location: 20356 - 22029 (-)
Gene ID: Rep_572_c_50_20
Type: TC
Location: 22039 - 22425 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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