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Cluster: Rep_572_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_572_c_45 Rep_572_c_45_22 23684 25294 + 3.A.11.1.1
pfam Rep_572_c_45 Rep_572_c_45_23 25304 26272 - DUF362
NULL(UNKNOWN) Rep_572_c_45 Rep_572_c_45_24 26413 26973 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_572_c_45 Rep_572_c_45_25 27078 28766 + 3.A.15.4.1
TC Rep_572_c_45 Rep_572_c_45_26 28778 29896 + 3.A.15.2.1
TC Rep_572_c_45 Rep_572_c_45_27 29900 31579 + 3.A.15.4.1
CAZyme Rep_572_c_45 Rep_572_c_45_28 31674 34130 - GH89
pfam Rep_572_c_45 Rep_572_c_45_29 34455 35159 + PEP-CTERM
TC Rep_572_c_45 Rep_572_c_45_30 35304 37154 + 3.B.1.1.1
TC Rep_572_c_45 Rep_572_c_45_31 37224 39221 + 3.A.1.106.1
Gene ID: Rep_572_c_45_22
Type: TC
Location: 23684 - 25294 (+)
Gene ID: Rep_572_c_45_23
Type: pfam
Location: 25304 - 26272 (-)
Gene ID: Rep_572_c_45_24
Type:
Location: 26413 - 26973 (+)
Gene ID: Rep_572_c_45_25
Type: TC
Location: 27078 - 28766 (+)
Gene ID: Rep_572_c_45_26
Type: TC
Location: 28778 - 29896 (+)
Gene ID: Rep_572_c_45_27
Type: TC
Location: 29900 - 31579 (+)
Gene ID: Rep_572_c_45_28
Type: CAZyme
Location: 31674 - 34130 (-)
Gene ID: Rep_572_c_45_29
Type: pfam
Location: 34455 - 35159 (+)
Gene ID: Rep_572_c_45_30
Type: TC
Location: 35304 - 37154 (+)
Gene ID: Rep_572_c_45_31
Type: TC
Location: 37224 - 39221 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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