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Cluster: Rep_569_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_569_c_21 Rep_569_c_21_2 1922 5098 - 1.B.14.6.1
TF Rep_569_c_21 Rep_569_c_21_3 5347 6099 + Rrf2
NULL(UNKNOWN) Rep_569_c_21 Rep_569_c_21_4 6238 7485 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_569_c_21 Rep_569_c_21_5 7494 9311 - CBM85 | GH10
pfam Rep_569_c_21 Rep_569_c_21_6 9366 10913 - ADP_ribosyl_GH
NULL(UNKNOWN) Rep_569_c_21 Rep_569_c_21_7 11327 11422 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_569_c_21 Rep_569_c_21_8 11539 13248 + 3.A.3.7.2
TC Rep_569_c_21 Rep_569_c_21_9 13271 15310 + 3.A.3.7.2
TC Rep_569_c_21 Rep_569_c_21_10 15372 15992 + 3.A.3.7.2
Gene ID: Rep_569_c_21_2
Type: TC
Location: 1922 - 5098 (-)
Gene ID: Rep_569_c_21_3
Type: TF
Location: 5347 - 6099 (+)
Gene ID: Rep_569_c_21_4
Type:
Location: 6238 - 7485 (-)
Gene ID: Rep_569_c_21_5
Type: CAZyme
Location: 7494 - 9311 (-)
Gene ID: Rep_569_c_21_6
Type: pfam
Location: 9366 - 10913 (-)
Gene ID: Rep_569_c_21_7
Type:
Location: 11327 - 11422 (+)
Gene ID: Rep_569_c_21_8
Type: TC
Location: 11539 - 13248 (+)
Gene ID: Rep_569_c_21_9
Type: TC
Location: 13271 - 15310 (+)
Gene ID: Rep_569_c_21_10
Type: TC
Location: 15372 - 15992 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Tannerellaceae
→
Genus
Parabacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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