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Cluster: Rep_569_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_569_c_186 Rep_569_c_186_3 1937 5296 + 1.B.14.6.1
pfam Rep_569_c_186 Rep_569_c_186_4 5317 6906 + SusD_RagB | SusD-like_3
CAZyme Rep_569_c_186 Rep_569_c_186_5 7249 9597 + GH92
CAZyme Rep_569_c_186 Rep_569_c_186_6 9604 11877 + GH92
CAZyme Rep_569_c_186 Rep_569_c_186_7 11910 14189 + GH92
TC Rep_569_c_186 Rep_569_c_186_8 14335 16911 - 2.A.21.9.1
CAZyme Rep_569_c_186 Rep_569_c_186_9 17227 19824 + CBM67 | GH78
pfam Rep_569_c_186 Rep_569_c_186_10 19960 20994 + Endonuclease_NS
TC Rep_569_c_186 Rep_569_c_186_11 21059 22120 + 8.A.1.6.2
TC Rep_569_c_186 Rep_569_c_186_12 22132 25173 + 2.A.6.2.37
Gene ID: Rep_569_c_186_3
Type: TC
Location: 1937 - 5296 (+)
Gene ID: Rep_569_c_186_4
Type: pfam
Location: 5317 - 6906 (+)
Gene ID: Rep_569_c_186_5
Type: CAZyme
Location: 7249 - 9597 (+)
Gene ID: Rep_569_c_186_6
Type: CAZyme
Location: 9604 - 11877 (+)
Gene ID: Rep_569_c_186_7
Type: CAZyme
Location: 11910 - 14189 (+)
Gene ID: Rep_569_c_186_8
Type: TC
Location: 14335 - 16911 (-)
Gene ID: Rep_569_c_186_9
Type: CAZyme
Location: 17227 - 19824 (+)
Gene ID: Rep_569_c_186_10
Type: pfam
Location: 19960 - 20994 (+)
Gene ID: Rep_569_c_186_11
Type: TC
Location: 21059 - 22120 (+)
Gene ID: Rep_569_c_186_12
Type: TC
Location: 22132 - 25173 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Tannerellaceae
→
Genus
Parabacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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