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Cluster: Rep_569_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_569_c_180 Rep_569_c_180_1 302 2341 - GH182
CAZyme Rep_569_c_180 Rep_569_c_180_2 2362 3360 - GH43_3
CAZyme Rep_569_c_180 Rep_569_c_180_3 3381 4346 - GH43_31
CAZyme Rep_569_c_180 Rep_569_c_180_4 4385 7207 - GH43_31
pfam Rep_569_c_180 Rep_569_c_180_5 7289 8860 - SusD_RagB | SusD-like_3
TC Rep_569_c_180 Rep_569_c_180_6 8886 11885 - 1.B.14.6.1
TF Rep_569_c_180 Rep_569_c_180_7 12358 16335 - HTH_AraC | HTH_AraC
peptidase Rep_569_c_180 Rep_569_c_180_8 16522 17742 + M16.UPB
TC Rep_569_c_180 Rep_569_c_180_9 17875 19275 - 2.A.25.1.5
Gene ID: Rep_569_c_180_1
Type: CAZyme
Location: 302 - 2341 (-)
Gene ID: Rep_569_c_180_2
Type: CAZyme
Location: 2362 - 3360 (-)
Gene ID: Rep_569_c_180_3
Type: CAZyme
Location: 3381 - 4346 (-)
Gene ID: Rep_569_c_180_4
Type: CAZyme
Location: 4385 - 7207 (-)
Gene ID: Rep_569_c_180_5
Type: pfam
Location: 7289 - 8860 (-)
Gene ID: Rep_569_c_180_6
Type: TC
Location: 8886 - 11885 (-)
Gene ID: Rep_569_c_180_7
Type: TF
Location: 12358 - 16335 (-)
Gene ID: Rep_569_c_180_8
Type: peptidase
Location: 16522 - 17742 (+)
Gene ID: Rep_569_c_180_9
Type: TC
Location: 17875 - 19275 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Tannerellaceae
→
Genus
Parabacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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