Cluster: Rep_569_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_569
- CGC Family ID: CGCFAM_00111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_569_c_12 | Rep_569_c_12_11 | 13746 | 17123 | - | 1.B.14.6.1 |
| STP | Rep_569_c_12 | Rep_569_c_12_12 | 17470 | 18489 | - | FecR |
| TF | Rep_569_c_12 | Rep_569_c_12_13 | 18643 | 19224 | + | GerE |
| CAZyme | Rep_569_c_12 | Rep_569_c_12_14 | 19249 | 21690 | - | GH20 |
| CAZyme | Rep_569_c_12 | Rep_569_c_12_15 | 21893 | 24094 | - | GH163 |
Gene ID: Rep_569_c_12_11
Type: TC
Location: 13746 - 17123 (-)
Type: TC
Location: 13746 - 17123 (-)
Gene ID: Rep_569_c_12_12
Type: STP
Location: 17470 - 18489 (-)
Type: STP
Location: 17470 - 18489 (-)
Gene ID: Rep_569_c_12_13
Type: TF
Location: 18643 - 19224 (+)
Type: TF
Location: 18643 - 19224 (+)
Gene ID: Rep_569_c_12_14
Type: CAZyme
Location: 19249 - 21690 (-)
Type: CAZyme
Location: 19249 - 21690 (-)
Gene ID: Rep_569_c_12_15
Type: CAZyme
Location: 21893 - 24094 (-)
Type: CAZyme
Location: 21893 - 24094 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.