Cluster: Rep_569_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_569
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_569_c_48 | Rep_569_c_48_37 | 45845 | 49165 | + | 1.B.14.6.1 |
| pfam | Rep_569_c_48 | Rep_569_c_48_38 | 49447 | 51135 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_569_c_48 | Rep_569_c_48_39 | 51155 | 54046 | + | GH31_4 |
| NULL(UNKNOWN) | Rep_569_c_48 | Rep_569_c_48_40 | 54284 | 54739 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_569_c_48 | Rep_569_c_48_41 | 55072 | 56577 | + | 2.A.36.6.11 |
Gene ID: Rep_569_c_48_37
Type: TC
Location: 45845 - 49165 (+)
Type: TC
Location: 45845 - 49165 (+)
Gene ID: Rep_569_c_48_38
Type: pfam
Location: 49447 - 51135 (+)
Type: pfam
Location: 49447 - 51135 (+)
Gene ID: Rep_569_c_48_39
Type: CAZyme
Location: 51155 - 54046 (+)
Type: CAZyme
Location: 51155 - 54046 (+)
Gene ID: Rep_569_c_48_40
Type:
Location: 54284 - 54739 (-)
Type:
Location: 54284 - 54739 (-)
Gene ID: Rep_569_c_48_41
Type: TC
Location: 55072 - 56577 (+)
Type: TC
Location: 55072 - 56577 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.