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Cluster: Rep_569_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_569_c_5 Rep_569_c_5_11 8887 11235 + GH3
pfam Rep_569_c_5 Rep_569_c_5_12 11241 13424 + TonB_dep_Rec_b-barrel
pfam Rep_569_c_5 Rep_569_c_5_13 13446 14735 + Cupin_1 | Cupin_2 | Lactamase_B_2 | Lactamase_B_3
TC Rep_569_c_5 Rep_569_c_5_14 14780 16027 + 9.B.169.1.8
pfam Rep_569_c_5 Rep_569_c_5_15 16132 16416 + Tautomerase
pfam Rep_569_c_5 Rep_569_c_5_16 16421 17455 + FMN_red | Flavodoxin_4 | Flavodoxin_5 | Cyclophil_like2
CAZyme Rep_569_c_5 Rep_569_c_5_17 17471 18355 + CE1
pfam Rep_569_c_5 Rep_569_c_5_18 18378 18884 + Cupin_2
TC Rep_569_c_5 Rep_569_c_5_19 18951 19823 + 9.A.25.1.1
Gene ID: Rep_569_c_5_11
Type: CAZyme
Location: 8887 - 11235 (+)
Gene ID: Rep_569_c_5_12
Type: pfam
Location: 11241 - 13424 (+)
Gene ID: Rep_569_c_5_13
Type: pfam
Location: 13446 - 14735 (+)
Gene ID: Rep_569_c_5_14
Type: TC
Location: 14780 - 16027 (+)
Gene ID: Rep_569_c_5_15
Type: pfam
Location: 16132 - 16416 (+)
Gene ID: Rep_569_c_5_16
Type: pfam
Location: 16421 - 17455 (+)
Gene ID: Rep_569_c_5_17
Type: CAZyme
Location: 17471 - 18355 (+)
Gene ID: Rep_569_c_5_18
Type: pfam
Location: 18378 - 18884 (+)
Gene ID: Rep_569_c_5_19
Type: TC
Location: 18951 - 19823 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Tannerellaceae
→
Genus
Parabacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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