Cluster: Rep_566_CGC60
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_566
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_566_c_3 | Rep_566_c_3_184 | 228087 | 231527 | + | 1.B.14.6.1 |
| TC | Rep_566_c_3 | Rep_566_c_3_185 | 231539 | 233386 | + | 8.A.46.1.5 |
| pfam | Rep_566_c_3 | Rep_566_c_3_186 | 233433 | 234104 | + | DUF3823 | DUF3823_C |
| CAZyme | Rep_566_c_3 | Rep_566_c_3_187 | 234167 | 235306 | + | GH130_3 |
| CAZyme | Rep_566_c_3 | Rep_566_c_3_188 | 235318 | 238008 | + | GH2 |
Gene ID: Rep_566_c_3_184
Type: TC
Location: 228087 - 231527 (+)
Type: TC
Location: 228087 - 231527 (+)
Gene ID: Rep_566_c_3_185
Type: TC
Location: 231539 - 233386 (+)
Type: TC
Location: 231539 - 233386 (+)
Gene ID: Rep_566_c_3_186
Type: pfam
Location: 233433 - 234104 (+)
Type: pfam
Location: 233433 - 234104 (+)
Gene ID: Rep_566_c_3_187
Type: CAZyme
Location: 234167 - 235306 (+)
Type: CAZyme
Location: 234167 - 235306 (+)
Gene ID: Rep_566_c_3_188
Type: CAZyme
Location: 235318 - 238008 (+)
Type: CAZyme
Location: 235318 - 238008 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_566_c_3_185 | vegetarian > omnivore | 1.18103 | 0.00110 |
| Rep_566_c_3_186 | vegetarian > omnivore | 1.16809 | 0.00110 |