Cluster: Rep_566_CGC43
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_566
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_566_c_1 | Rep_566_c_1_940 | 1139248 | 1142406 | + | 1.B.14.6.1 |
| TC | Rep_566_c_1 | Rep_566_c_1_941 | 1142419 | 1144260 | + | 8.A.46.1.6 |
| pfam | Rep_566_c_1 | Rep_566_c_1_942 | 1144333 | 1146018 | - | DUF6057 |
| pfam | Rep_566_c_1 | Rep_566_c_1_943 | 1146032 | 1147459 | - | PD40 | PD40 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_944 | 1147622 | 1149103 | + | GH28 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_945 | 1149162 | 1149914 | + | GH28 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_946 | 1149930 | 1152812 | + | GH106 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_947 | 1152849 | 1154318 | + | GH28 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_948 | 1154740 | 1156392 | - | GH156 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_949 | 1156407 | 1158728 | - | GH92 |
Gene ID: Rep_566_c_1_940
Type: TC
Location: 1139248 - 1142406 (+)
Type: TC
Location: 1139248 - 1142406 (+)
Gene ID: Rep_566_c_1_941
Type: TC
Location: 1142419 - 1144260 (+)
Type: TC
Location: 1142419 - 1144260 (+)
Gene ID: Rep_566_c_1_942
Type: pfam
Location: 1144333 - 1146018 (-)
Type: pfam
Location: 1144333 - 1146018 (-)
Gene ID: Rep_566_c_1_943
Type: pfam
Location: 1146032 - 1147459 (-)
Type: pfam
Location: 1146032 - 1147459 (-)
Gene ID: Rep_566_c_1_944
Type: CAZyme
Location: 1147622 - 1149103 (+)
Type: CAZyme
Location: 1147622 - 1149103 (+)
Gene ID: Rep_566_c_1_945
Type: CAZyme
Location: 1149162 - 1149914 (+)
Type: CAZyme
Location: 1149162 - 1149914 (+)
Gene ID: Rep_566_c_1_946
Type: CAZyme
Location: 1149930 - 1152812 (+)
Type: CAZyme
Location: 1149930 - 1152812 (+)
Gene ID: Rep_566_c_1_947
Type: CAZyme
Location: 1152849 - 1154318 (+)
Type: CAZyme
Location: 1152849 - 1154318 (+)
Gene ID: Rep_566_c_1_948
Type: CAZyme
Location: 1154740 - 1156392 (-)
Type: CAZyme
Location: 1154740 - 1156392 (-)
Gene ID: Rep_566_c_1_949
Type: CAZyme
Location: 1156407 - 1158728 (-)
Type: CAZyme
Location: 1156407 - 1158728 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_566_c_1_940 | vegetarian > omnivore | 1.16303 | 0.00110 |
| Rep_566_c_1_941 | vegetarian > omnivore | 1.04344 | 0.00110 |
| Rep_566_c_1_942 | vegetarian > omnivore | 1.36879 | 0.00110 |
| Rep_566_c_1_943 | vegetarian > omnivore | 1.32630 | 0.00110 |
| Rep_566_c_1_944 | vegetarian > omnivore | 1.17389 | 0.00110 |
| Rep_566_c_1_945 | vegetarian > omnivore | 1.43210 | 0.00110 |
| Rep_566_c_1_946 | vegetarian > omnivore | 1.04711 | 0.00110 |
| Rep_566_c_1_947 | vegetarian > omnivore | 1.02239 | 0.00110 |
| Rep_566_c_1_948 | vegetarian > omnivore | 1.07794 | 0.00110 |