Cluster: Rep_566_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_566
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_566_c_1 | Rep_566_c_1_354 | 389139 | 391835 | - | GH2 |
| pfam | Rep_566_c_1 | Rep_566_c_1_355 | 391973 | 393310 | - | FAD_binding_2 | GIDA | FAD_oxidored | NAD_binding_8 |
| TC | Rep_566_c_1 | Rep_566_c_1_356 | 393367 | 394848 | - | 8.A.46.3.2 |
| TC | Rep_566_c_1 | Rep_566_c_1_357 | 394866 | 398225 | - | 1.B.14.6.1 |
Gene ID: Rep_566_c_1_354
Type: CAZyme
Location: 389139 - 391835 (-)
Type: CAZyme
Location: 389139 - 391835 (-)
Gene ID: Rep_566_c_1_355
Type: pfam
Location: 391973 - 393310 (-)
Type: pfam
Location: 391973 - 393310 (-)
Gene ID: Rep_566_c_1_356
Type: TC
Location: 393367 - 394848 (-)
Type: TC
Location: 393367 - 394848 (-)
Gene ID: Rep_566_c_1_357
Type: TC
Location: 394866 - 398225 (-)
Type: TC
Location: 394866 - 398225 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_566_c_1_354 | vegetarian > omnivore | 1.48033 | 0.00110 |
| Rep_566_c_1_355 | vegetarian > omnivore | 1.56120 | 0.00110 |
| Rep_566_c_1_355 | vegetarian > vegan | 1.00792 | 0.00565 |
| Rep_566_c_1_356 | vegetarian > omnivore | 1.93976 | 0.00110 |
| Rep_566_c_1_356 | vegetarian > vegan | 1.26785 | 0.00565 |
| Rep_566_c_1_357 | vegetarian > omnivore | 1.43907 | 0.00110 |