Cluster: Rep_566_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_566
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_566_c_0 | Rep_566_c_0_1525 | 1596789 | 1598063 | - | 2.A.66.1.28 |
| NULL(UNKNOWN) | Rep_566_c_0 | Rep_566_c_0_1526 | 1598237 | 1599235 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_566_c_0 | Rep_566_c_0_1527 | 1599326 | 1600942 | - | 3.A.1.120.6 |
| TC | Rep_566_c_0 | Rep_566_c_0_1528 | 1601341 | 1601592 | + | 1.E.43.1.10 |
| CAZyme | Rep_566_c_0 | Rep_566_c_0_1529 | 1601663 | 1603930 | - | GH2 |
Gene ID: Rep_566_c_0_1525
Type: TC
Location: 1596789 - 1598063 (-)
Type: TC
Location: 1596789 - 1598063 (-)
Gene ID: Rep_566_c_0_1526
Type:
Location: 1598237 - 1599235 (+)
Type:
Location: 1598237 - 1599235 (+)
Gene ID: Rep_566_c_0_1527
Type: TC
Location: 1599326 - 1600942 (-)
Type: TC
Location: 1599326 - 1600942 (-)
Gene ID: Rep_566_c_0_1528
Type: TC
Location: 1601341 - 1601592 (+)
Type: TC
Location: 1601341 - 1601592 (+)
Gene ID: Rep_566_c_0_1529
Type: CAZyme
Location: 1601663 - 1603930 (-)
Type: CAZyme
Location: 1601663 - 1603930 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.