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Cluster: Rep_566_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_566_c_0 Rep_566_c_0_1277 1312453 1314801 + GH20
CAZyme Rep_566_c_0 Rep_566_c_0_1278 1314947 1317397 - GH51_2
STP Rep_566_c_0 Rep_566_c_0_1279 1317598 1318716 + HATPase_c | HisKA | Response_reg
CAZyme Rep_566_c_0 Rep_566_c_0_1280 1318779 1319537 - GT2
pfam Rep_566_c_0 Rep_566_c_0_1281 1319625 1322999 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
TC Rep_566_c_0 Rep_566_c_0_1282 1323013 1324917 + 4.C.1.1.14
CAZyme Rep_566_c_0 Rep_566_c_0_1283 1325005 1327608 + GH2
TC Rep_566_c_0 Rep_566_c_0_1284 1327733 1329292 - 2.A.50.2.1
Gene ID: Rep_566_c_0_1277
Type: CAZyme
Location: 1312453 - 1314801 (+)
Gene ID: Rep_566_c_0_1278
Type: CAZyme
Location: 1314947 - 1317397 (-)
Gene ID: Rep_566_c_0_1279
Type: STP
Location: 1317598 - 1318716 (+)
Gene ID: Rep_566_c_0_1280
Type: CAZyme
Location: 1318779 - 1319537 (-)
Gene ID: Rep_566_c_0_1281
Type: pfam
Location: 1319625 - 1322999 (+)
Gene ID: Rep_566_c_0_1282
Type: TC
Location: 1323013 - 1324917 (+)
Gene ID: Rep_566_c_0_1283
Type: CAZyme
Location: 1325005 - 1327608 (+)
Gene ID: Rep_566_c_0_1284
Type: TC
Location: 1327733 - 1329292 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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