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Cluster: Rep_566_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_566_c_0 Rep_566_c_0_187 179972 181912 + GH133
CAZyme Rep_566_c_0 Rep_566_c_0_188 181927 183195 + GT4
CAZyme Rep_566_c_0 Rep_566_c_0_189 183213 184520 + GH57
pfam Rep_566_c_0 Rep_566_c_0_190 184608 185993 - DUF4270
CAZyme Rep_566_c_0 Rep_566_c_0_191 186004 186873 - GT5
pfam Rep_566_c_0 Rep_566_c_0_192 186922 187761 + Pantoate_ligase
pfam Rep_566_c_0 Rep_566_c_0_193 187964 188314 + Asp_decarbox
TC Rep_566_c_0 Rep_566_c_0_194 188421 189743 + 2.A.66.1.28
STP Rep_566_c_0 Rep_566_c_0_195 189879 190604 + FHA
TC Rep_566_c_0 Rep_566_c_0_196 190621 191913 + 9.B.106.3.3
Gene ID: Rep_566_c_0_187
Type: CAZyme
Location: 179972 - 181912 (+)
Gene ID: Rep_566_c_0_188
Type: CAZyme
Location: 181927 - 183195 (+)
Gene ID: Rep_566_c_0_189
Type: CAZyme
Location: 183213 - 184520 (+)
Gene ID: Rep_566_c_0_190
Type: pfam
Location: 184608 - 185993 (-)
Gene ID: Rep_566_c_0_191
Type: CAZyme
Location: 186004 - 186873 (-)
Gene ID: Rep_566_c_0_192
Type: pfam
Location: 186922 - 187761 (+)
Gene ID: Rep_566_c_0_193
Type: pfam
Location: 187964 - 188314 (+)
Gene ID: Rep_566_c_0_194
Type: TC
Location: 188421 - 189743 (+)
Gene ID: Rep_566_c_0_195
Type: STP
Location: 189879 - 190604 (+)
Gene ID: Rep_566_c_0_196
Type: TC
Location: 190621 - 191913 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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