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Cluster: Rep_564_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_564_c_2 Rep_564_c_2_48 47059 49665 + GH3
pfam Rep_564_c_2 Rep_564_c_2_49 49786 50760 - PMI_typeI_cat | MPI_cupin_dom
CAZyme Rep_564_c_2 Rep_564_c_2_50 50818 52833 - GH13_8
TC Rep_564_c_2 Rep_564_c_2_51 53310 55619 + 2.A.37.4.2
TF Rep_564_c_2 Rep_564_c_2_52 55616 59635 + HTH_AraC
CAZyme Rep_564_c_2 Rep_564_c_2_53 59751 62477 + GH2
pfam Rep_564_c_2 Rep_564_c_2_54 62563 63333 + BetaGal_ABD_1 | BetaGal_gal-bd
CAZyme Rep_564_c_2 Rep_564_c_2_55 63432 65549 - GH2
TF Rep_564_c_2 Rep_564_c_2_56 65707 69738 + HTH_AraC
TC Rep_564_c_2 Rep_564_c_2_57 69921 72971 + 1.B.14.6.1
TC Rep_564_c_2 Rep_564_c_2_58 72984 74603 + 8.A.46.1.6
CAZyme Rep_564_c_2 Rep_564_c_2_59 74767 75939 + GH105
TC Rep_564_c_2 Rep_564_c_2_60 76268 79600 + 9.A.25.1.1
Gene ID: Rep_564_c_2_48
Type: CAZyme
Location: 47059 - 49665 (+)
Gene ID: Rep_564_c_2_49
Type: pfam
Location: 49786 - 50760 (-)
Gene ID: Rep_564_c_2_50
Type: CAZyme
Location: 50818 - 52833 (-)
Gene ID: Rep_564_c_2_51
Type: TC
Location: 53310 - 55619 (+)
Gene ID: Rep_564_c_2_52
Type: TF
Location: 55616 - 59635 (+)
Gene ID: Rep_564_c_2_53
Type: CAZyme
Location: 59751 - 62477 (+)
Gene ID: Rep_564_c_2_54
Type: pfam
Location: 62563 - 63333 (+)
Gene ID: Rep_564_c_2_55
Type: CAZyme
Location: 63432 - 65549 (-)
Gene ID: Rep_564_c_2_56
Type: TF
Location: 65707 - 69738 (+)
Gene ID: Rep_564_c_2_57
Type: TC
Location: 69921 - 72971 (+)
Gene ID: Rep_564_c_2_58
Type: TC
Location: 72984 - 74603 (+)
Gene ID: Rep_564_c_2_59
Type: CAZyme
Location: 74767 - 75939 (+)
Gene ID: Rep_564_c_2_60
Type: TC
Location: 76268 - 79600 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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