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Cluster: Rep_564_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_564_c_42 Rep_564_c_42_11 9231 11234 + 2.A.21.9.2
CAZyme Rep_564_c_42 Rep_564_c_42_12 11273 12451 + GT2
TC Rep_564_c_42 Rep_564_c_42_13 12480 13724 - 3.A.1.125.1
STP Rep_564_c_42 Rep_564_c_42_14 13742 14941 - Aminotran_1_2
TC Rep_564_c_42 Rep_564_c_42_15 15076 15975 - 2.A.115.1.1
NULL(UNKNOWN) Rep_564_c_42 Rep_564_c_42_16 16111 16467 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_564_c_42 Rep_564_c_42_17 16901 17431 - DNA_binding_1 | Methyltransf_1N
TC Rep_564_c_42 Rep_564_c_42_18 17439 18614 - 2.A.1.46.5
TC Rep_564_c_42 Rep_564_c_42_19 18620 20503 - 3.A.1.120.6
TC Rep_564_c_42 Rep_564_c_42_20 20807 21760 + 9.B.125.2.2
Gene ID: Rep_564_c_42_11
Type: TC
Location: 9231 - 11234 (+)
Gene ID: Rep_564_c_42_12
Type: CAZyme
Location: 11273 - 12451 (+)
Gene ID: Rep_564_c_42_13
Type: TC
Location: 12480 - 13724 (-)
Gene ID: Rep_564_c_42_14
Type: STP
Location: 13742 - 14941 (-)
Gene ID: Rep_564_c_42_15
Type: TC
Location: 15076 - 15975 (-)
Gene ID: Rep_564_c_42_16
Type:
Location: 16111 - 16467 (-)
Gene ID: Rep_564_c_42_17
Type: pfam
Location: 16901 - 17431 (-)
Gene ID: Rep_564_c_42_18
Type: TC
Location: 17439 - 18614 (-)
Gene ID: Rep_564_c_42_19
Type: TC
Location: 18620 - 20503 (-)
Gene ID: Rep_564_c_42_20
Type: TC
Location: 20807 - 21760 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_564_c_42_19 vegetarian > omnivore 1.21100 0.00180

🧭 Explore Read Mapping of CGC

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