Cluster: Rep_564_CGC54
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_564
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_564_c_36 | Rep_564_c_36_18 | 24756 | 27413 | + | PL40 |
| CAZyme | Rep_564_c_36 | Rep_564_c_36_19 | 27447 | 30644 | + | PL8_3 |
| CAZyme | Rep_564_c_36 | Rep_564_c_36_20 | 30661 | 32520 | + | PL35 |
| CAZyme | Rep_564_c_36 | Rep_564_c_36_21 | 32523 | 33722 | + | GH88 |
| TF | Rep_564_c_36 | Rep_564_c_36_22 | 33917 | 34465 | + | GerE |
| STP | Rep_564_c_36 | Rep_564_c_36_23 | 34542 | 35480 | + | FecR |
| TC | Rep_564_c_36 | Rep_564_c_36_24 | 35682 | 39197 | + | 1.B.14.6.1 |
| pfam | Rep_564_c_36 | Rep_564_c_36_25 | 39224 | 40933 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_564_c_36 | Rep_564_c_36_26 | 40952 | 42169 | + | Glyco_tran_WbsX |
| CAZyme | Rep_564_c_36 | Rep_564_c_36_27 | 42503 | 44101 | + | GH20 |
Gene ID: Rep_564_c_36_18
Type: CAZyme
Location: 24756 - 27413 (+)
Type: CAZyme
Location: 24756 - 27413 (+)
Gene ID: Rep_564_c_36_19
Type: CAZyme
Location: 27447 - 30644 (+)
Type: CAZyme
Location: 27447 - 30644 (+)
Gene ID: Rep_564_c_36_20
Type: CAZyme
Location: 30661 - 32520 (+)
Type: CAZyme
Location: 30661 - 32520 (+)
Gene ID: Rep_564_c_36_21
Type: CAZyme
Location: 32523 - 33722 (+)
Type: CAZyme
Location: 32523 - 33722 (+)
Gene ID: Rep_564_c_36_22
Type: TF
Location: 33917 - 34465 (+)
Type: TF
Location: 33917 - 34465 (+)
Gene ID: Rep_564_c_36_23
Type: STP
Location: 34542 - 35480 (+)
Type: STP
Location: 34542 - 35480 (+)
Gene ID: Rep_564_c_36_24
Type: TC
Location: 35682 - 39197 (+)
Type: TC
Location: 35682 - 39197 (+)
Gene ID: Rep_564_c_36_25
Type: pfam
Location: 39224 - 40933 (+)
Type: pfam
Location: 39224 - 40933 (+)
Gene ID: Rep_564_c_36_26
Type: pfam
Location: 40952 - 42169 (+)
Type: pfam
Location: 40952 - 42169 (+)
Gene ID: Rep_564_c_36_27
Type: CAZyme
Location: 42503 - 44101 (+)
Type: CAZyme
Location: 42503 - 44101 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp902493135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_564_c_36_23 | vegetarian > omnivore | 2.00473 | 0.00180 |
| Rep_564_c_36_23 | vegetarian > vegan | 1.13959 | 0.00226 |
| Rep_564_c_36_24 | vegetarian > omnivore | 1.77827 | 0.00180 |
| Rep_564_c_36_24 | vegetarian > vegan | 1.39990 | 0.00226 |
| Rep_564_c_36_25 | vegetarian > omnivore | 2.07064 | 0.00180 |
| Rep_564_c_36_25 | vegetarian > vegan | 1.15486 | 0.00226 |
| Rep_564_c_36_26 | vegetarian > omnivore | 1.73532 | 0.00180 |
| Rep_564_c_36_26 | vegetarian > vegan | 1.39386 | 0.00226 |