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Cluster: Rep_564_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_564_c_35 Rep_564_c_35_32 33128 40600 + 9.A.25.1.1
TC Rep_564_c_35 Rep_564_c_35_33 40764 41954 + 3.A.1.7.5
TC Rep_564_c_35 Rep_564_c_35_34 41963 42850 + 3.A.1.7.2
TC Rep_564_c_35 Rep_564_c_35_35 42864 43616 + 3.A.1.7.1
pfam Rep_564_c_35 Rep_564_c_35_36 43655 44329 + PhoU | PhoU
pfam Rep_564_c_35 Rep_564_c_35_37 44518 45720 + Porin_O_P
CAZyme Rep_564_c_35 Rep_564_c_35_38 45746 48175 - GH95
Gene ID: Rep_564_c_35_32
Type: TC
Location: 33128 - 40600 (+)
Gene ID: Rep_564_c_35_33
Type: TC
Location: 40764 - 41954 (+)
Gene ID: Rep_564_c_35_34
Type: TC
Location: 41963 - 42850 (+)
Gene ID: Rep_564_c_35_35
Type: TC
Location: 42864 - 43616 (+)
Gene ID: Rep_564_c_35_36
Type: pfam
Location: 43655 - 44329 (+)
Gene ID: Rep_564_c_35_37
Type: pfam
Location: 44518 - 45720 (+)
Gene ID: Rep_564_c_35_38
Type: CAZyme
Location: 45746 - 48175 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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