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Cluster: Rep_564_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_564_c_28 Rep_564_c_28_25 35155 38391 - 1.B.14.6.1
TC Rep_564_c_28 Rep_564_c_28_26 39015 42245 + 1.B.14.6.1
pfam Rep_564_c_28 Rep_564_c_28_27 42259 44256 + SusD_RagB | SusD-like_3
TC Rep_564_c_28 Rep_564_c_28_28 44569 47742 + 1.B.14.6.13
TC Rep_564_c_28 Rep_564_c_28_29 47818 49737 + 8.A.46.2.2
pfam Rep_564_c_28 Rep_564_c_28_30 49840 50721 - Acyl_transf_1
pfam Rep_564_c_28 Rep_564_c_28_31 50863 51057 + TatA_B_E
TC Rep_564_c_28 Rep_564_c_28_32 51085 51939 + 2.A.64.1.3
CAZyme Rep_564_c_28 Rep_564_c_28_33 52038 54260 + GH92
Gene ID: Rep_564_c_28_25
Type: TC
Location: 35155 - 38391 (-)
Gene ID: Rep_564_c_28_26
Type: TC
Location: 39015 - 42245 (+)
Gene ID: Rep_564_c_28_27
Type: pfam
Location: 42259 - 44256 (+)
Gene ID: Rep_564_c_28_28
Type: TC
Location: 44569 - 47742 (+)
Gene ID: Rep_564_c_28_29
Type: TC
Location: 47818 - 49737 (+)
Gene ID: Rep_564_c_28_30
Type: pfam
Location: 49840 - 50721 (-)
Gene ID: Rep_564_c_28_31
Type: pfam
Location: 50863 - 51057 (+)
Gene ID: Rep_564_c_28_32
Type: TC
Location: 51085 - 51939 (+)
Gene ID: Rep_564_c_28_33
Type: CAZyme
Location: 52038 - 54260 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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