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Cluster: Rep_564_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_564_c_24 Rep_564_c_24_2 805 3354 - GH116
TC Rep_564_c_24 Rep_564_c_24_3 3416 5047 - 8.A.46.1.3
TC Rep_564_c_24 Rep_564_c_24_4 5053 8319 - 1.B.14.6.1
STP Rep_564_c_24 Rep_564_c_24_5 8554 9579 - FecR
TF Rep_564_c_24 Rep_564_c_24_6 9714 10307 + GerE
CAZyme Rep_564_c_24 Rep_564_c_24_7 10278 11477 - GH97
CAZyme Rep_564_c_24 Rep_564_c_24_8 11416 13410 - GH97
pfam Rep_564_c_24 Rep_564_c_24_9 13578 14927 - OEP | OEP
pfam Rep_564_c_24 Rep_564_c_24_10 14945 16066 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_564_c_24 Rep_564_c_24_11 16113 17375 - 3.A.1.122.12
TC Rep_564_c_24 Rep_564_c_24_12 17487 18752 - 3.A.1.122.1
TC Rep_564_c_24 Rep_564_c_24_13 18745 19431 - 3.A.1.122.2
Gene ID: Rep_564_c_24_2
Type: CAZyme
Location: 805 - 3354 (-)
Gene ID: Rep_564_c_24_3
Type: TC
Location: 3416 - 5047 (-)
Gene ID: Rep_564_c_24_4
Type: TC
Location: 5053 - 8319 (-)
Gene ID: Rep_564_c_24_5
Type: STP
Location: 8554 - 9579 (-)
Gene ID: Rep_564_c_24_6
Type: TF
Location: 9714 - 10307 (+)
Gene ID: Rep_564_c_24_7
Type: CAZyme
Location: 10278 - 11477 (-)
Gene ID: Rep_564_c_24_8
Type: CAZyme
Location: 11416 - 13410 (-)
Gene ID: Rep_564_c_24_9
Type: pfam
Location: 13578 - 14927 (-)
Gene ID: Rep_564_c_24_10
Type: pfam
Location: 14945 - 16066 (-)
Gene ID: Rep_564_c_24_11
Type: TC
Location: 16113 - 17375 (-)
Gene ID: Rep_564_c_24_12
Type: TC
Location: 17487 - 18752 (-)
Gene ID: Rep_564_c_24_13
Type: TC
Location: 18745 - 19431 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_564_c_24_7 vegetarian > omnivore 1.05119 0.00180

🧭 Explore Read Mapping of CGC

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