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Cluster: Rep_564_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_564_c_20 Rep_564_c_20_1 75 1781 - 8.A.46.1.6
TC Rep_564_c_20 Rep_564_c_20_2 1794 5072 - 1.B.14.6.1
STP Rep_564_c_20 Rep_564_c_20_3 5278 6255 - FecR
TF Rep_564_c_20 Rep_564_c_20_4 6332 6901 - GerE
CAZyme Rep_564_c_20 Rep_564_c_20_5 7078 8076 - GH43_31
CAZyme Rep_564_c_20 Rep_564_c_20_6 8093 9157 - GH43_3
pfam Rep_564_c_20 Rep_564_c_20_7 9249 11066 - SusD_RagB | SusD-like_3
TC Rep_564_c_20 Rep_564_c_20_8 11109 14678 - 1.B.14.6.1
Gene ID: Rep_564_c_20_1
Type: TC
Location: 75 - 1781 (-)
Gene ID: Rep_564_c_20_2
Type: TC
Location: 1794 - 5072 (-)
Gene ID: Rep_564_c_20_3
Type: STP
Location: 5278 - 6255 (-)
Gene ID: Rep_564_c_20_4
Type: TF
Location: 6332 - 6901 (-)
Gene ID: Rep_564_c_20_5
Type: CAZyme
Location: 7078 - 8076 (-)
Gene ID: Rep_564_c_20_6
Type: CAZyme
Location: 8093 - 9157 (-)
Gene ID: Rep_564_c_20_7
Type: pfam
Location: 9249 - 11066 (-)
Gene ID: Rep_564_c_20_8
Type: TC
Location: 11109 - 14678 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_564_c_20_5 vegetarian > omnivore 1.25184 0.00180

🧭 Explore Read Mapping of CGC

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