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Cluster: Rep_564_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_564_c_19 Rep_564_c_19_48 54535 55695 - CE9
CAZyme Rep_564_c_19 Rep_564_c_19_49 55699 56865 - CE9
NULL(UNKNOWN) Rep_564_c_19 Rep_564_c_19_50 57018 57251 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_564_c_19 Rep_564_c_19_51 57147 59090 - 3.A.1.121.4
CAZyme Rep_564_c_19 Rep_564_c_19_52 59149 60189 - GH159
CAZyme Rep_564_c_19 Rep_564_c_19_53 60223 63135 - GH2
pfam Rep_564_c_19 Rep_564_c_19_54 63231 64835 - SusD_RagB | SusD-like_3
TC Rep_564_c_19 Rep_564_c_19_55 64875 67991 - 1.B.14.6.1
TC Rep_564_c_19 Rep_564_c_19_56 68840 71902 + 1.B.14.6.1
TC Rep_564_c_19 Rep_564_c_19_57 71926 73581 + 8.A.46.1.6
Gene ID: Rep_564_c_19_48
Type: CAZyme
Location: 54535 - 55695 (-)
Gene ID: Rep_564_c_19_49
Type: CAZyme
Location: 55699 - 56865 (-)
Gene ID: Rep_564_c_19_50
Type:
Location: 57018 - 57251 (+)
Gene ID: Rep_564_c_19_51
Type: TC
Location: 57147 - 59090 (-)
Gene ID: Rep_564_c_19_52
Type: CAZyme
Location: 59149 - 60189 (-)
Gene ID: Rep_564_c_19_53
Type: CAZyme
Location: 60223 - 63135 (-)
Gene ID: Rep_564_c_19_54
Type: pfam
Location: 63231 - 64835 (-)
Gene ID: Rep_564_c_19_55
Type: TC
Location: 64875 - 67991 (-)
Gene ID: Rep_564_c_19_56
Type: TC
Location: 68840 - 71902 (+)
Gene ID: Rep_564_c_19_57
Type: TC
Location: 71926 - 73581 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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