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Cluster: Rep_564_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_564_c_4 Rep_564_c_4_102 127970 131206 + 1.B.14.6.1
TC Rep_564_c_4 Rep_564_c_4_103 131220 132941 + 8.A.46.1.6
CAZyme Rep_564_c_4 Rep_564_c_4_104 132953 134338 + GH177
TF Rep_564_c_4 Rep_564_c_4_105 134505 135038 + GerE
STP Rep_564_c_4 Rep_564_c_4_106 135102 136085 + FecR
TC Rep_564_c_4 Rep_564_c_4_107 136279 139788 + 1.B.14.6.1
pfam Rep_564_c_4 Rep_564_c_4_108 139807 141618 + SusD_RagB | SusD-like_3
CAZyme Rep_564_c_4 Rep_564_c_4_109 141630 143198 + GH28
STP Rep_564_c_4 Rep_564_c_4_110 143542 144765 + EPSP_synthase
NULL(UNKNOWN) Rep_564_c_4 Rep_564_c_4_111 144816 145241 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_564_c_4 Rep_564_c_4_112 145407 146210 + 3.A.1.15.3
Gene ID: Rep_564_c_4_102
Type: TC
Location: 127970 - 131206 (+)
Gene ID: Rep_564_c_4_103
Type: TC
Location: 131220 - 132941 (+)
Gene ID: Rep_564_c_4_104
Type: CAZyme
Location: 132953 - 134338 (+)
Gene ID: Rep_564_c_4_105
Type: TF
Location: 134505 - 135038 (+)
Gene ID: Rep_564_c_4_106
Type: STP
Location: 135102 - 136085 (+)
Gene ID: Rep_564_c_4_107
Type: TC
Location: 136279 - 139788 (+)
Gene ID: Rep_564_c_4_108
Type: pfam
Location: 139807 - 141618 (+)
Gene ID: Rep_564_c_4_109
Type: CAZyme
Location: 141630 - 143198 (+)
Gene ID: Rep_564_c_4_110
Type: STP
Location: 143542 - 144765 (+)
Gene ID: Rep_564_c_4_111
Type:
Location: 144816 - 145241 (+)
Gene ID: Rep_564_c_4_112
Type: TC
Location: 145407 - 146210 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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