Cluster: Rep_556_CGC95
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_556
- CGC Family ID: CGCFAM_00158
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_556_c_79 | Rep_556_c_79_12 | 14194 | 15897 | - | 8.A.46.1.3 |
| TC | Rep_556_c_79 | Rep_556_c_79_13 | 15910 | 19305 | - | 1.B.14.6.1 |
| STP | Rep_556_c_79 | Rep_556_c_79_14 | 19474 | 20406 | - | FecR |
| STP | Rep_556_c_79 | Rep_556_c_79_15 | 20618 | 21142 | + | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_556_c_79 | Rep_556_c_79_16 | 21232 | 24144 | - | GH2 |
| pfam | Rep_556_c_79 | Rep_556_c_79_17 | 24236 | 25843 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_79 | Rep_556_c_79_18 | 25883 | 28615 | - | 1.B.14.6.1 |
Gene ID: Rep_556_c_79_12
Type: TC
Location: 14194 - 15897 (-)
Type: TC
Location: 14194 - 15897 (-)
Gene ID: Rep_556_c_79_13
Type: TC
Location: 15910 - 19305 (-)
Type: TC
Location: 15910 - 19305 (-)
Gene ID: Rep_556_c_79_14
Type: STP
Location: 19474 - 20406 (-)
Type: STP
Location: 19474 - 20406 (-)
Gene ID: Rep_556_c_79_15
Type: STP
Location: 20618 - 21142 (+)
Type: STP
Location: 20618 - 21142 (+)
Gene ID: Rep_556_c_79_16
Type: CAZyme
Location: 21232 - 24144 (-)
Type: CAZyme
Location: 21232 - 24144 (-)
Gene ID: Rep_556_c_79_17
Type: pfam
Location: 24236 - 25843 (-)
Type: pfam
Location: 24236 - 25843 (-)
Gene ID: Rep_556_c_79_18
Type: TC
Location: 25883 - 28615 (-)
Type: TC
Location: 25883 - 28615 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.