Cluster: Rep_556_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_556_c_1 | Rep_556_c_1_38 | 54681 | 57965 | + | 1.B.14.6.2 |
| TC | Rep_556_c_1 | Rep_556_c_1_39 | 58003 | 59613 | + | 8.A.46.2.2 |
| CAZyme | Rep_556_c_1 | Rep_556_c_1_40 | 59735 | 62134 | + | GH3 |
| TF | Rep_556_c_1 | Rep_556_c_1_41 | 62281 | 62862 | + | GerE |
| STP | Rep_556_c_1 | Rep_556_c_1_42 | 62969 | 63934 | + | FecR |
| TC | Rep_556_c_1 | Rep_556_c_1_43 | 64102 | 67497 | + | 1.B.14.6.2 |
Gene ID: Rep_556_c_1_38
Type: TC
Location: 54681 - 57965 (+)
Type: TC
Location: 54681 - 57965 (+)
Gene ID: Rep_556_c_1_39
Type: TC
Location: 58003 - 59613 (+)
Type: TC
Location: 58003 - 59613 (+)
Gene ID: Rep_556_c_1_40
Type: CAZyme
Location: 59735 - 62134 (+)
Type: CAZyme
Location: 59735 - 62134 (+)
Gene ID: Rep_556_c_1_41
Type: TF
Location: 62281 - 62862 (+)
Type: TF
Location: 62281 - 62862 (+)
Gene ID: Rep_556_c_1_42
Type: STP
Location: 62969 - 63934 (+)
Type: STP
Location: 62969 - 63934 (+)
Gene ID: Rep_556_c_1_43
Type: TC
Location: 64102 - 67497 (+)
Type: TC
Location: 64102 - 67497 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.