Cluster: Rep_556_CGC88
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_556_c_70 | Rep_556_c_70_16 | 23061 | 23546 | + | GH73 |
| NULL(UNKNOWN) | Rep_556_c_70 | Rep_556_c_70_17 | 23792 | 24121 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_556_c_70 | Rep_556_c_70_18 | 24189 | 25274 | - | GldN |
| TC | Rep_556_c_70 | Rep_556_c_70_19 | 25319 | 26887 | - | 9.A.25.1.1 |
| pfam | Rep_556_c_70 | Rep_556_c_70_20 | 26911 | 27984 | - | GldL_N |
| TC | Rep_556_c_70 | Rep_556_c_70_21 | 28074 | 29477 | - | 9.A.25.1.1 |
| TC | Rep_556_c_70 | Rep_556_c_70_22 | 29505 | 30449 | - | 9.B.172.1.1 |
Gene ID: Rep_556_c_70_16
Type: CAZyme
Location: 23061 - 23546 (+)
Type: CAZyme
Location: 23061 - 23546 (+)
Gene ID: Rep_556_c_70_17
Type:
Location: 23792 - 24121 (+)
Type:
Location: 23792 - 24121 (+)
Gene ID: Rep_556_c_70_18
Type: pfam
Location: 24189 - 25274 (-)
Type: pfam
Location: 24189 - 25274 (-)
Gene ID: Rep_556_c_70_19
Type: TC
Location: 25319 - 26887 (-)
Type: TC
Location: 25319 - 26887 (-)
Gene ID: Rep_556_c_70_20
Type: pfam
Location: 26911 - 27984 (-)
Type: pfam
Location: 26911 - 27984 (-)
Gene ID: Rep_556_c_70_21
Type: TC
Location: 28074 - 29477 (-)
Type: TC
Location: 28074 - 29477 (-)
Gene ID: Rep_556_c_70_22
Type: TC
Location: 29505 - 30449 (-)
Type: TC
Location: 29505 - 30449 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.